| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4810 |
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| Symbol | |
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| ID | 7970280 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5127757 |
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| End bp | 5130735 |
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| Gene Length | 2979 bp |
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| Protein Length | 992 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644795405 |
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| Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
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| Protein accession | YP_002946681 |
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| Protein GI | 239817771 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
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| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACCTGC CCATCCCTTA CCGGCCTGAA GCCGATGTCG TCTCGCACCG GCTCGCCTCG
CTCGAAGGCG CGCTCGACTG GCGCGCCGCG GCCGCCGCCG CCACGCCCTG GGTGGAGGCG
GTGCGCCGCC ATCCGCCGCC GTTCTGGGCC ATGGAAAGCC TGCTGCGCGA GTACCCGATC
TCCAGCGCCG AGGGCCTTGC GCTGATGCGC CTGGCCGAGG CGCTGCTGCG CGTGCCCGAC
GCCGCCACGG CCATTGCGCT CACGGCCGAC CAGCTGGGCC GGGCCGATTT CGAGGGCACG
GCCGATTCCA CGCTGTCGCG GCTGTCGTCC GCCGCCATCG CGATGTCGAA GAAATTCCTG
CCCGAAGGCG ACCATCCGCC CGGCCTCATG GCCAAGCTCG GCTCCCGCAC GGTGGTGGCC
GCCACTTTGC GCGCGGTGCA GTTGCTGGGG CGCCAGTTCG TGCTCGGACA GACCATCGCC
GAAGCCATGG ACGAGGCCCG CTCGGCGCAC CGCCGGCAGG GCGCGCTGCG CTTCAGCTAC
GACATGCTCG GCGAAGGCGC GCGCACCGAT GCCGATGCGC TGCGCTACCT CGAGAGCTAC
ACGCAGGCCA TCGGCGCCAT TGCGGCCGGT GCCGATGCGG CGCGCGGGCC CGAGCACAAC
GACGGCATCT CCATCAAGCT CAGCGCGCTG CATCCGCGCT ACGAGGACGC GCAGCGCGAG
CGCGTGATGC GCGAGCTGGT GCCGCGCGTG TGGCAGCTGT GCGAACTGGC GGCCGATGCC
GGCCTCAACC TCACCATCGA TGCCGAAGAG GTCGACCGGC TCGAGCTGTC GCTCGACGTG
TTCGAGGCGC TGGCCGCGCG CGTGGCCGCC GAACGGCCGC AATGGCGCGG CTTCGGCTTG
GCGCTGCAGG CCTACCAGAC GCGCGCGCTC GAATTGATTG CGCACGTCAC GGCGGTGGCG
CGCCGGCACA AGCTGCGGCT GATGTGCCGC CTCGTGAAGG GCGCCTACTG GGACGCCGAG
ATCAAGCGGG CCCAGGAACT CGGCCTGCCG CACTACCCGG TCTTCACGCA CAAGCACCAC
AGCGACGTGA GCTACCTGGC TTGCGCGCGT GCGCTGCTGT CGGCGCCCGA TGCGGTCTAT
CCGCAGTTCG CCACCCACAA CGCGGGCACC ATCGCCGCCA TCCTGCAGAT GGCCGAGGCG
GCCGGCGCGC CCTTCGAGCT GCAGCGTCTG CATGGCATGG GCGAGGGCGT CTACCGCGAA
GTGATGAAGA GCACCACAGC GCCGGTGCGC GTGTACGCCC CGGTGGGCCA GCACAAGGAC
CTGCTCGCCT ACCTCGTGCG GCGCCTCTTG GAAAACGGCG CCAACTCGTC CTTCGTGAAC
CAGCTCGGCG ACGAGCAGGT GGACATCGGC GAGCTGCTGA TGTCGCCGCT CTGGCTCGAG
GAGGCGAACC CCGCCCTGCC GCTGCCGCCC GCGCTCTACG GCCCGCCGCC GGCGCGGCGC
AACAGCGAAG GCATCGACCT TGCCGTCGAG CCGATGCGCG CGCCGCTGCT GGCCGCGCTG
GAGACCACGG CGGTGCCGCA TGTCGAATTG TTCGATGCCG CCAGCGCGCC CAAGGCCGTG
GCCGCCAGCG CTGCCGCTTC CCGCAGCTGG CGCAAGACGC CGGTCGAGGC GCGCGCCGCC
ATGCTGCGCG AGGCCGCCGA CGCGCTGCAG CGCGAGTTGT CGCGCTTTTG CGCGCTGCTG
GTCAAGGAGG CCTTCAAGAC CTGGGGCGAC GCGGTGGCCG AAGTGCGCGA GGCCGTCGAC
TTCCTGCGCT ACTACGCCGA CGAGGCCGAG CGCATCATGC AGCCCGTGGC GCTGCCCGGC
CCCACGGGCG AGAGCAACGA ACTGCGGCTC ACGGCGCGCG GCCCCTGGGT GTGCATCAGC
CCGTGGAATT TTCCGCTCGC GATCTTCGCG GGCCAGGTGG CGGCCGCGCT TGCCACCGGC
AACACGGTGC TGGCCAAGCC GGCCGAGCAG ACGCCGGCCA TCGCGCTCGA AGCCGTGAAG
CTGCTGCACG CCGCGGGCGT GCCGGCCGAT GCGCTGCAGC TGCTGCACGG GCCCGGCGAA
ACCGTGGGCG CCGCGCTGGT GGCGGCGCCG GGCGTGGCGG GCGTGGTGTT CACCGGTTCG
ACCCAGGTGG CGCGCATCAT CCACCGCGCG CTTGCCGCCA AGGACGGCCC GATCGTGCCG
CTGATCGCCG AGACCGGCGG CATCAACGCG ATGCTGGTCG ATTCGAGCGC GCTGCCCGAG
CAGGTGGTCG ACGCCGTGGT GCAGAGCGCA TTCCGCTCGG CCGGCCAGCG CTGCTCGGCC
TTGCGCCTCC TGGTGCTGCA CGAGGGCATC GCCGATGCGG TGATCGAGAT GATCCGCGGC
GCGGCCGGGG AGCTGGCCGC GGGCGACCCG GCGCTGCTTT CGACCGACGT GGGGCCGGTG
ATCGACGCCG AGGCGGCCGA CAACATCCGG CGCCATCTGA AGCGGCTGGA TTCGGAAGCG
AAGCGGCTGC TCGCGCCGGC TTCTTCTACT TCTTCAACCG AGGGCAACCT GATCGCGCCG
CAGGCCTACG AGGTGCCCTC GATCGACAGC GTGACCAGCG AGATCTTCGG GCCGGTGCTG
CAGATCGCGC GCTGGGGCTC GGGCGCGCTG CGCGATCCCG CCGAGGTGAT CGATCGCATC
AACGCGCTCG GCTACGGCCT CACGCTCGGC ATCCAGACCC GCATCGACTC GCGCGCGCAG
GCGCTCGCGG CGCGGGCGCA CGTGGGCAAC ATCTACGTGA ACCGCAACAT CATCGGCGCG
GTGGTCGGCG TGCAGCCCTT CGGCGGCGAG GGGCTGAGCG GCACCGGCCC CAAGGCCGGC
GGGCCGCACT ATCTTTACCG CTTCTGTGCC GAGCAGACGG TCACGGTCAA CACCACGGCG
GCCGGCGGCA ACGCGGCGCT GCTGAGCGCG GTGGCCTGA
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| Protein sequence | MHLPIPYRPE ADVVSHRLAS LEGALDWRAA AAAATPWVEA VRRHPPPFWA MESLLREYPI
SSAEGLALMR LAEALLRVPD AATAIALTAD QLGRADFEGT ADSTLSRLSS AAIAMSKKFL
PEGDHPPGLM AKLGSRTVVA ATLRAVQLLG RQFVLGQTIA EAMDEARSAH RRQGALRFSY
DMLGEGARTD ADALRYLESY TQAIGAIAAG ADAARGPEHN DGISIKLSAL HPRYEDAQRE
RVMRELVPRV WQLCELAADA GLNLTIDAEE VDRLELSLDV FEALAARVAA ERPQWRGFGL
ALQAYQTRAL ELIAHVTAVA RRHKLRLMCR LVKGAYWDAE IKRAQELGLP HYPVFTHKHH
SDVSYLACAR ALLSAPDAVY PQFATHNAGT IAAILQMAEA AGAPFELQRL HGMGEGVYRE
VMKSTTAPVR VYAPVGQHKD LLAYLVRRLL ENGANSSFVN QLGDEQVDIG ELLMSPLWLE
EANPALPLPP ALYGPPPARR NSEGIDLAVE PMRAPLLAAL ETTAVPHVEL FDAASAPKAV
AASAAASRSW RKTPVEARAA MLREAADALQ RELSRFCALL VKEAFKTWGD AVAEVREAVD
FLRYYADEAE RIMQPVALPG PTGESNELRL TARGPWVCIS PWNFPLAIFA GQVAAALATG
NTVLAKPAEQ TPAIALEAVK LLHAAGVPAD ALQLLHGPGE TVGAALVAAP GVAGVVFTGS
TQVARIIHRA LAAKDGPIVP LIAETGGINA MLVDSSALPE QVVDAVVQSA FRSAGQRCSA
LRLLVLHEGI ADAVIEMIRG AAGELAAGDP ALLSTDVGPV IDAEAADNIR RHLKRLDSEA
KRLLAPASST SSTEGNLIAP QAYEVPSIDS VTSEIFGPVL QIARWGSGAL RDPAEVIDRI
NALGYGLTLG IQTRIDSRAQ ALAARAHVGN IYVNRNIIGA VVGVQPFGGE GLSGTGPKAG
GPHYLYRFCA EQTVTVNTTA AGGNAALLSA VA
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