| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4802 |
|---|
| Symbol | |
|---|
| ID | 7970272 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 5119730 |
|---|
| End bp | 5121823 |
|---|
| Gene Length | 2094 bp |
|---|
| Protein Length | 697 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644795397 |
|---|
| Product | Prolyl oligopeptidase |
|---|
| Protein accession | YP_002946673 |
|---|
| Protein GI | 239817763 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1505] Serine proteases of the peptidase family S9A |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTTCT TCACGGCGGA TTCGTACACT GCGCCCATGA CATCCACCGC TTCCACGCAG
ACCGACGAGC ACCAGTGGCT CGAAGACATC GACGGCGCCG AACAGCTCGA ATGGGCGCGC
CAGCACAACG CGAAGACCGT GCGGCGCTAC GCGCTGTCGC CCGCCTTCGA GCGGATGGAG
CAGGGCATCC TCGAAGTGCT CGACTCCGAG GCCCGCATTC CGATGGTGCG CAAGATCGGC
CCGCTCTTCT ACAACTTCTG GCGCGACAAG AAGAACCCCA AGGGCCTGTG GCGGCGCACC
ACGCTGGCCG AATACCGCAA GCCCCAGCCG GAATGGGAAA CCGTGCTCGA CCTCGACGCG
CTGGCCGAGG CCGACAAGGA AAACTGGGTC TGGCACGGCG CCGATTGCCT GCAGCCCGGC
TACAAGCGCT GCCTCGTCTC GCTCTCGCGC GGCGGCGCCG ATGCGAACGT CGTGCGCGAG
TTCGACCTCG AGCTCAAGCA GTTCGTCGCA AGCGGCTTCA CGCTGCCCGA GGCCAAGAGC
AACGTGGCGT GGAAAGACAT CGACCACCTC TACGTGGCCA CCGACTTCGG CCCCGGCTCT
ATGACCAGTT CGAGCTACCC GCGCATCGTC AAGGAATGGA AGCGCGGCAC GCCGCTGGAA
AGCGCGGCCA CGGTCTACGA GGGCGGCGAG GACGACATGA CGGTCAGCGC CTGGCGCGAC
AACACGCCGG GCTTCGAGCG CGACTTCGTC TCGCGCCAGA TGGACTTCTA CGACAGCGAG
ACCTGGCTGC GCACGGGCGA CGGCCGGCTG GTGAAGATCG ACGTGCCCGA CGACGCCAGC
ACCGAGGTCA CGCGCGAGTG GATGCTGGTC GAGCCGCGCA GCCCCTGGAC CGTGGGCGGC
ACCACCTACA AGCCGGGCTC GCTGCTGGCA ATGCGCTTCG ACGACTACAT GGCCGGCCGG
CGCGAGATCA CCGTGCTGTT CGAGCCCGAC GACACGACCG CGCTCGACGA CTATTCGTGG
ACCCGCCACC ACCTGATCCT CAACGTGATG CACGACGTGG TGAACCGGCT CGAAGTGCTC
ACGCCAGGGG CCAGCTCCAA GGCATGGAAG CGCGAGAGCC TGGGCGGCGC GCCCGAGCTC
TCGACCATTG CGGCCGGGGG TGTCGACGAG GACGAGAACG ACGACTACTT CCTGACCGTG
AGCGGCTTCC TGCAGCCGAC CACGCTCTAC ATCGGCACCA TCGGCCGGGG CGAGCCCGAG
CCGCTGAAGG ACAGCCCCGC CTTCTTCGAT GCCTCCGGCT ATCGCGTGAG CCAGCATTTC
GCCACCTCGA AGGACGGCAC GCGCGTGCCC TACTTCGAGA TCGCGCCCAG GAACCTGCAG
GCCGACGGCA GGAACCCCAC GCTGCAGTAC GCCTACGGCG GCTTCGAGAT CTCGCTGCAG
CCCAGCTACA GCGGCGCCAT CGGCCGCGCA TGGCTCGAGC GGGGCGGCGT CTACGTGGTG
GCCAACATCC GCGGCGGCGG CGAGTACGGG CCGCGCTGGC ACCAGGCCGC GCTGCAGCGC
GACCGCCTGC GCACCTGCGA AGACTTCGCC GCGGTTTCGG AGCACCTCGT CGCGCGCAAC
ATCACTTCGC CGCCGCACCT GGGTGCCATG GGCGGCAGCA ACGGCGGGCT GCTGATGGGC
AACATGCTCA CGCTGTATCC CACGCTCTAC GGCGCCATCG TGAGCGAGGT GGCGCTGCTC
GACATGAAGC GCTACACGCA TCTGTCGGCC GGCGCCTCGT GGATTGCCGA ATACGGCGAC
CCGGACGATC CGGAAGAATG GGCCTGGATC CAGGCCTTCT CGCCCTACGA GAATGCGAAG
CCCGGCCAGC CCTATCCGCC GGCGCTCTTC ACCACGTCGA CGCGCGACGA CCGCGTGGGC
CCGGTGCACG CACGCAAGAT GCATGCGAAG CTGGCCGCCA TGGGCTACGA CTCCAGCTTC
TACGAGAACA TCGAAGGCGG CCACAGCGCG GCCACCGACA ACAAGGAGGC CGCCTTCATG
GACGCCCTGG GCTACGCCTA CCTGTGGGAG CACATCGGAC GGACATCCGC ATGA
|
|---|
| Protein sequence | MPFFTADSYT APMTSTASTQ TDEHQWLEDI DGAEQLEWAR QHNAKTVRRY ALSPAFERME
QGILEVLDSE ARIPMVRKIG PLFYNFWRDK KNPKGLWRRT TLAEYRKPQP EWETVLDLDA
LAEADKENWV WHGADCLQPG YKRCLVSLSR GGADANVVRE FDLELKQFVA SGFTLPEAKS
NVAWKDIDHL YVATDFGPGS MTSSSYPRIV KEWKRGTPLE SAATVYEGGE DDMTVSAWRD
NTPGFERDFV SRQMDFYDSE TWLRTGDGRL VKIDVPDDAS TEVTREWMLV EPRSPWTVGG
TTYKPGSLLA MRFDDYMAGR REITVLFEPD DTTALDDYSW TRHHLILNVM HDVVNRLEVL
TPGASSKAWK RESLGGAPEL STIAAGGVDE DENDDYFLTV SGFLQPTTLY IGTIGRGEPE
PLKDSPAFFD ASGYRVSQHF ATSKDGTRVP YFEIAPRNLQ ADGRNPTLQY AYGGFEISLQ
PSYSGAIGRA WLERGGVYVV ANIRGGGEYG PRWHQAALQR DRLRTCEDFA AVSEHLVARN
ITSPPHLGAM GGSNGGLLMG NMLTLYPTLY GAIVSEVALL DMKRYTHLSA GASWIAEYGD
PDDPEEWAWI QAFSPYENAK PGQPYPPALF TTSTRDDRVG PVHARKMHAK LAAMGYDSSF
YENIEGGHSA ATDNKEAAFM DALGYAYLWE HIGRTSA
|
|---|
| |