| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4740 |
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| Symbol | |
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| ID | 7971750 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5038066 |
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| End bp | 5039022 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795325 |
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| Product | protein of unknown function DUF45 |
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| Protein accession | YP_002946611 |
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| Protein GI | 239817701 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1451] Predicted metal-dependent hydrolase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.677282 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACCTGT TCGAAGGGTT GGGCAGCGAG TTTGCGCCGG CCAAGCCGAG CGAGCCGCGC
GGCAAGAAGG TCCGGAAAAA GGCGGCGCCG CCGGCCGTGC CCGCACCCCC GGTGGTCGAT
GCGCAGCCTG CAGGCAGGGC CGGGGACGCC GGTCCCGCGC AGCCCGCCGT CCCGCTGCGC
GACACGCTCG CGCTCGCAAG CTTCGTGCAC CCTGAGGCCA CGCGCGAAGC GGTGCTGGGA
TCGGCGCGCG TGGCCTACGA GTTCAAGCGC GGCAAGCGCA AGACCATCGG CTTCGTGGTG
GGCGCCGAAG GCCTGTCGGT GCGCGCGCCG CGCTGGGTCA CGCTGCGCGA CGTCGATGCC
GCCATCCAGG AAAAGGCCGG CTGGATCCTG CGCAAGCTGC TGGAGACGCA GCAGCGCCAC
GCACGCGTCG AGGCCACGCG CATCGACTGG AAGGACGGCG CGGAGTTTCC CTTCATGGGC
GAGACGGTCG TGATCCGCCT CGATCCGAAG CACGGCTTTG CAAGCGTCGG CGGCACGCTC
GATGCAAGCG ATGACGCCGC CGGCCCGCGC ACTTTGCGCC TGGCCGTGGC GCAGAACGCC
GAGGCCTCGC AGATCCGCGA TGCCGCCCAA GCCTGGCTCA TGCGGCAGGC GCGCCGGCTG
TTCATCGAGC GGCTCGACCA TTTCGCGCCC CGGCTCGGGG TGCGGTGGCA GAAGCTGTCG
CTGTCGAATG CCGCGACTCG CTGGGGAAGC GCGAGCGCGG ATGGGTCGAT CCGGCTGAAC
TGGCGGCTGA TCCACTTTCG CCTGCCGGTG ATCGACTATG TGGTGGCGCA CGAGCTGGCG
CACCTGCGGG TGATGGACCA CTCGCAGCGG TTCTGGGATA CGGTGGAGAG CGTGGTGCCG
GACTATGACC TGCTGCGGCG GCAGCTCAAG GATGAGGCTG TGCCTAGGTG GTCTTGA
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| Protein sequence | MDLFEGLGSE FAPAKPSEPR GKKVRKKAAP PAVPAPPVVD AQPAGRAGDA GPAQPAVPLR
DTLALASFVH PEATREAVLG SARVAYEFKR GKRKTIGFVV GAEGLSVRAP RWVTLRDVDA
AIQEKAGWIL RKLLETQQRH ARVEATRIDW KDGAEFPFMG ETVVIRLDPK HGFASVGGTL
DASDDAAGPR TLRLAVAQNA EASQIRDAAQ AWLMRQARRL FIERLDHFAP RLGVRWQKLS
LSNAATRWGS ASADGSIRLN WRLIHFRLPV IDYVVAHELA HLRVMDHSQR FWDTVESVVP
DYDLLRRQLK DEAVPRWS
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