| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4731 |
|---|
| Symbol | |
|---|
| ID | 7971741 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5027588 |
|---|
| End bp | 5028838 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644795316 |
|---|
| Product | peptidase M20 |
|---|
| Protein accession | YP_002946602 |
|---|
| Protein GI | 239817692 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCCAT TCAATCAACG CACCCTGCTC GCAGCCCTGC TGGCCACCGC CTTGCTGGCG
CCAGCCGCCG GCTGGGCGCA GAAGCGCGAC AACGTGCTGT TCCAGGCCGC CACCGATGCG
CAGCCCGCGG TGCTCAAGAC GCTGGAGCAG CTGGTCAACA TCGAAACCGG CACGGGCGAT
GCCGAGGGCA TTGCGGCCGC GGGCAACTAC CTCGAGGGCG AGCTCAAGAA TCTTGGCTTC
ACCGTCACGC GCAGCAAGTC GGCCGGCCTC GTGGTGGGCG ACAACATCGT CGGCAAGCTC
AAGGGCCGGG GCGGCAAGAA CCTGCTGCTG ATGTCGCACA TGGACACCGT GTACCTCAAG
GGCACGCTCG CCAAGGCGCC GTTCCGCATC GAAGGCAACA AGGCCTACGG CCCCGGCATT
GCCGACGACA AGGGCGGCAA CGCCGTCATC CTGCACACGC TGAAGCTGCT CAAGGACTAC
GGCGTGCGCG ACTACGGCAC CATCACCGTG CTGTTCAACA CCGACGAGGA AAAAGGCTCC
TTCGGCTCGC GCGACCTGAT CCAGGAAGAA GCCAAGCAGG CCGACTACGT GCTCTCGTTC
GAACCCACGA GCGCGGGCGA CGAGAAGCTC TCGCTCGGCA CTTCGGGCAT TGCCTACGTG
CAGGTCAACA TCACCGGCAA GGCCTCGCAT GCGGGCGCCG CGCCCGACCT GGGCGTGAAC
GCGCTGGTCG AGGCGTCGGA CCTCGTGCTG CGCACCATGA GCATCGACGA CAAGGCCAGG
CACCTGCGCT TCAACTGGAC CATGTCCAAG GCCGGCAACG TGTCGAACAT CATTCCGGCC
AGCGCCACGC TGAACGCCGA CGTGCGCTAT GCGCAGAACG AGGACTTCGA GGCCGCCATG
AAGACGCTCG AAGAAAAGGC GCAGCAGAAG AAGCTGCCCG AATCCGATGT CAAGGTGGTG
GTCACGCGCG GCCGTCCGGC CTTCAACGCC GGCGAAGGCG GCAAGAAGCT GGTCGACAAG
GCCGTGGCCT ACTACAAGGA AGCCGGCGGC ACGCTGGGCG TGGAAGAGCG CACCGGCGGC
GGCACCGACG CGGCCTACGC GGCGCTCTCG GGCAAGCCCG TGATCGAGAG CCTGGGCCTG
CCGGGCTTCG GCTACCACAG CGACAAGGCC GAGTACGTCG ACATCAGCGC GATTCCAAGG
CGCCTGTACA TGGCGGCGCG GCTCATCATG GACCTGGGCG CCGGCAAGTA A
|
|---|
| Protein sequence | MRPFNQRTLL AALLATALLA PAAGWAQKRD NVLFQAATDA QPAVLKTLEQ LVNIETGTGD
AEGIAAAGNY LEGELKNLGF TVTRSKSAGL VVGDNIVGKL KGRGGKNLLL MSHMDTVYLK
GTLAKAPFRI EGNKAYGPGI ADDKGGNAVI LHTLKLLKDY GVRDYGTITV LFNTDEEKGS
FGSRDLIQEE AKQADYVLSF EPTSAGDEKL SLGTSGIAYV QVNITGKASH AGAAPDLGVN
ALVEASDLVL RTMSIDDKAR HLRFNWTMSK AGNVSNIIPA SATLNADVRY AQNEDFEAAM
KTLEEKAQQK KLPESDVKVV VTRGRPAFNA GEGGKKLVDK AVAYYKEAGG TLGVEERTGG
GTDAAYAALS GKPVIESLGL PGFGYHSDKA EYVDISAIPR RLYMAARLIM DLGAGK
|
|---|
| |