| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4728 |
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| Symbol | |
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| ID | 7971738 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5023807 |
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| End bp | 5025693 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795313 |
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| Product | thiamine biosynthesis protein ThiC |
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| Protein accession | YP_002946599 |
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| Protein GI | 239817689 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
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| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGCCC CCGACAAGTT CACCTCCCTG CTCTCGCTCA CGCGCGAGCC CTTTCCCGCA
TCGCACAAGT GCCTGATCCC GGGCAGCCGG CCCGACCTCA ACGTGCCGGT GCGCGACGTG
CTGCTGACCA ACGGCGAGAC CGTGTCGCTC TACGACACCT CGGGCCCCTA CACCGATGCC
AAGGTCGAGA TCGACGTGCG CCGCGGCCTG CCCGGCGTGC GCGGCGCCTG GATCACCGAG
CGCAACGACA CCGAAAGCTA CGAAGGCCGC TCGCACCAGG CGCTCGACGA GGGCCTGAAG
CACGCGCACG ACCACGATGC CCAGCGCCTG GCCGAACTGC GGGCCGGCGC CTCGGCGCTG
CAGCGCACGC CGCGCCGCGC CAAGGCGGGC GCCAACGTCA CGCAGATGCA CTACGCGCGC
CGCGGCATCG TCACACCCGA GATGGAATAC GTGGCGCTGC GCGAGAACGG CAAGCGCGAG
TGGATGGCCG AATACCTCGC CAACGAGGAG CGCGCCAAGC GCGTGGCCGG CAACCCGATG
GGCGCCAGCA TTCCGCGCAT CATCACGCCC GAGTTCGTGC GCGACGAGGT GGCGCGCGGC
CGCGCCATCA TCCCGGCCAA CATCAACCAT CCTGAAGTGG AGCCGATGGC CATCGGCCGC
AACTTCAAGG TCAAGATCAA CGCCAACATC GGCAACTCGG CCGTCACCTC GAGCATCGAG
GAAGAAGTGG AAAAGCTCGT GTGGGCGATC CGCTGGGGCG CCGACAACGT GATGGACCTT
TCCACCGGCA AGAACATCCA CACCACGCGC GACTGGATCG TGCGCAACAG TCCCGTGCCC
ATCGGCACCG TGCCGATCTA CCAGGCGCTC GAGAAGGTGG GCGGCGTGGC CGAGGACCTG
ACCTGGGAGA TCTTCCGCGA CACGCTGATC GAGCAGGCCG AGCAGGGCAT CGACTACTTC
ACCATCCATG CCGGCGTGCG GCTGCCGTTC ATCCACCTGA CGGCCGACCG CATGACGGGC
ATCGTCTCGC GCGGCGGCTC GATCATGGCC AAGTGGTGCA TCGCGCACCA CAAGGAGAGC
TTTCTCTACG AGCGCTTCGA GGACATCTGC GACATCATGA AGGCCTACGA CGTGAGCTTC
TCGCTCGGCG ACGGCCTGCG CCCGGGCTCG GGCGCCGACG CCAACGACGA AGCGCAGTTT
GCCGAGCTGC GCACGCTGGG CGAGCTCACG CAGATCGCAT GGAAGCACGA CGTGCAGACC
ATGATCGAGG GGCCCGGCCA CGTGCCGATG CACATGATCC AGGCCAACAT GGACGAGCAG
CTCAAGCACT GCCACGAGGC GCCGTTCTAC ACGCTCGGGC CGCTGACCAT CGACATCGCG
CCGGGCTACG ACCATATCTC CAGCGCCATC GGCGCCGCGA TGATCGGCTG GGCCGGCACC
GCGATGCTCT GCTACGTGAC GCCCAAGGAG CACCTGGGCC TGCCCGACCG CGACGACGTG
AAGCAGGGGA TCATTGCCTA CAAGATCGCC GCGCATGCGG CCGACGTGGC CAAGGGGCAC
CCCGGCGCGC GCTCGCGCGA CGATGCGCTC AGCAAGGCGC GCTTCGAATT CCGCTGGCAG
GACCAGTTCA ACCTGGGCCT GGACCCCGAC ACGGCGCGCG AATTCCATGA CGAGACCCTG
CCCAAGGATT CGAGCAAGGT GGCGCATTTC TGCTCGATGT GCGGACCGAA GTTCTGCTCG
ATGAAGATCA CGCAGGAAGT GCGCGAGTAC GCGGCGAAGA AGGGCGTGGC CGAGGCGGAA
GCCATGGCCG AAGGAATGGC GCAGAAGTCC AGGGAGTTCA TGGCGGGCGG CGGCGAGATC
TACATCCCGA TCCAGCCCGC GTCCTGA
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| Protein sequence | MNAPDKFTSL LSLTREPFPA SHKCLIPGSR PDLNVPVRDV LLTNGETVSL YDTSGPYTDA
KVEIDVRRGL PGVRGAWITE RNDTESYEGR SHQALDEGLK HAHDHDAQRL AELRAGASAL
QRTPRRAKAG ANVTQMHYAR RGIVTPEMEY VALRENGKRE WMAEYLANEE RAKRVAGNPM
GASIPRIITP EFVRDEVARG RAIIPANINH PEVEPMAIGR NFKVKINANI GNSAVTSSIE
EEVEKLVWAI RWGADNVMDL STGKNIHTTR DWIVRNSPVP IGTVPIYQAL EKVGGVAEDL
TWEIFRDTLI EQAEQGIDYF TIHAGVRLPF IHLTADRMTG IVSRGGSIMA KWCIAHHKES
FLYERFEDIC DIMKAYDVSF SLGDGLRPGS GADANDEAQF AELRTLGELT QIAWKHDVQT
MIEGPGHVPM HMIQANMDEQ LKHCHEAPFY TLGPLTIDIA PGYDHISSAI GAAMIGWAGT
AMLCYVTPKE HLGLPDRDDV KQGIIAYKIA AHAADVAKGH PGARSRDDAL SKARFEFRWQ
DQFNLGLDPD TAREFHDETL PKDSSKVAHF CSMCGPKFCS MKITQEVREY AAKKGVAEAE
AMAEGMAQKS REFMAGGGEI YIPIQPAS
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