| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4723 |
|---|
| Symbol | |
|---|
| ID | 7971733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5018145 |
|---|
| End bp | 5019827 |
|---|
| Gene Length | 1683 bp |
|---|
| Protein Length | 560 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644795308 |
|---|
| Product | AMP-binding domain protein |
|---|
| Protein accession | YP_002946594 |
|---|
| Protein GI | 239817684 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.712671 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACATGA CTGCTGCGCT GGACAAGAGC TACGCCAAGG GCGCCACCAA CGTCCCCCTC
ATCGAACAAA CCATCGGCGA CTTCTTCGAC GGCATGGCCG CGAAGCAGCC CGACCGCGAG
GCGCTCGTCA GCCGCCACGA AGGCAAGCGC TTCACCTACC GCGAGCTGCG GGCCGAGTCC
AACAAGCTGG CCAGCGCATT GCTGAAGCTG GGGCTCGCAC CCGGCGACCG CGTGGGCATC
TGGTCGCACA ACAACGCGCC CTGGGTGCTG ATGCAGATCG CGACCGCCAA GGCCGGGCTG
ATCCTCGTCA ACATCAACCC GGCCTACCGC ACCTCCGAGC TCGAATACGC GCTCAACAAG
GTCGGCTGCA AGGCGCTGGT GACGATGGCG CAGTTCAAGA CCAGCGACTA CCTGGGCATG
CTGCGCGAGC TCGGCCCCCA GCGCCTGCCG CAGCTGCGCC ACACCTTCTG GATCGACGGC
AAGGCCGCGG CCGATGTGCA GGAGCCCGGC ATGCAGCGCT TCAGCGAGCT GCTCGCAAGC
GGCGATGCGG CCGACCCGCG CGTGGCCGCC ACGCAAAAGA CGCTCAAGGC CACCGACCCG
ATCAACATCC AGTTCACCAG CGGCACCACG GGCTTTCCCA AGGGCGCGAC GCTCACGCAC
CGCAACATCC TCAACAACGG CTTCTTCATC GGCGAATGCA TGAAGCTCAC GCCGGCCGAC
AGGCTGTGCA TTCCGGTGCC GCTCTACCAC TGCTTCGGCA TGGTGCTCGG CAACCTGGCC
TGCCTCACGC ATGGCTCGGC CATCGTGTAT CCGAACGACG GCTTCGATCC GCTCACGGTG
CTCGAGACTG TGCAGGCCGA AAAATGCACC GGCCTGCACG GCGTGCCCAC CATGTTCATC
GCCGAGCTCG ACCATCCACG CTTCAAGGAG TTCGACCTGT CCACGCTGCG CACCGGCATC
ATGGCCGGCT CGCCGTGCCC GACCGAGGTG ATGAAGCGCG TGGTGAACGA GATGCACCTG
GGCGAAATCA CCATCGCCTA CGGCATGACC GAGACCAGCC CCGTGAGCTG CCAGAGCAGC
ACCGACACGC CGCTGGACAA GCGTGTGTCC ACCGTGGGCA CGGTGCAGCC GCACCTGGAG
ATCAAGATCA TCGACCCCGA GACCGGGGCC ATCGTGCCGC GCGGCAGCTC CGGCGAGTTC
TGCACGCGCG GCTACTCGGT GATGCACGGC TACTGGGAAG ACGAGCCCAA GACCCGCGAA
GCCATCGATA CCGAGCACTG GATGCACACC GGCGACCTGG CCACCATGGA CGCCGAGGGC
TACGTGAATA TCGTCGGCCG CATCAAGGAC CTCGTGATCC GCGGCGGCGA GAACATCTAC
CCGCGCGAGA TCGAGGAATT CCTGTACCGC CACCCGAAGG TGCAGGACGT GCAGGTGGTC
GGCCTGCCCG ACCGGAAGTA CGGCGAGGAG CTGTGCGCCT GGATCATCGC CAAGCCCGGC
CAGGCCGCGA CCGAAGACGA GATCCGCGAC TTCTGCAAGG GCCAGATCGC GCACTACAAG
GTGCCGAAGT ACATCCGCTT CGTCACCGAG TTTCCGATGA CGGTGACCGG CAAGATCCAG
AAATTCAAGA TCCGCGAAGC GATGGCCGAG CAGCTCGGCC TCGAACAAGA AAAGACAGCA
TGA
|
|---|
| Protein sequence | MNMTAALDKS YAKGATNVPL IEQTIGDFFD GMAAKQPDRE ALVSRHEGKR FTYRELRAES
NKLASALLKL GLAPGDRVGI WSHNNAPWVL MQIATAKAGL ILVNINPAYR TSELEYALNK
VGCKALVTMA QFKTSDYLGM LRELGPQRLP QLRHTFWIDG KAAADVQEPG MQRFSELLAS
GDAADPRVAA TQKTLKATDP INIQFTSGTT GFPKGATLTH RNILNNGFFI GECMKLTPAD
RLCIPVPLYH CFGMVLGNLA CLTHGSAIVY PNDGFDPLTV LETVQAEKCT GLHGVPTMFI
AELDHPRFKE FDLSTLRTGI MAGSPCPTEV MKRVVNEMHL GEITIAYGMT ETSPVSCQSS
TDTPLDKRVS TVGTVQPHLE IKIIDPETGA IVPRGSSGEF CTRGYSVMHG YWEDEPKTRE
AIDTEHWMHT GDLATMDAEG YVNIVGRIKD LVIRGGENIY PREIEEFLYR HPKVQDVQVV
GLPDRKYGEE LCAWIIAKPG QAATEDEIRD FCKGQIAHYK VPKYIRFVTE FPMTVTGKIQ
KFKIREAMAE QLGLEQEKTA
|
|---|
| |