Gene Vapar_4709 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4709 
Symbol 
ID7971719 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp5004716 
End bp5005204 
Gene Length489 bp 
Protein Length162 aa 
Translation table11 
GC content70% 
IMG OID644795294 
ProductYbaK/prolyl-tRNA synthetase associated region 
Protein accessionYP_002946580 
Protein GI239817670 
COG category[S] Function unknown 
COG ID[COG2606] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTGCGGCG CTGAACTCCA TTCGCTGCCC GAGGGCGTGC AGCGCGTCTC GCGCATGCTT 
CAGGACGCGG GCCACCCCCA TTCGCCGCGC ATGCTCGACG ACGCCTGCCG CACCGCCCAG 
CAGGCGGCCG ACGCGCTCGG CATTTTGGTC GGGCAGATCG CCAAGAGCAT CATCTTCCGG 
CGCAAGAGCG ACGACGCGGC GGTGCTGGTC ATCACCTCGG GCGACAAGCG CGTCGACGAG 
AAGAAAGTCG ATGCGCTGGT CGGCAAGACC GGCCGCGCCG ATGCGGAGTT CGTGAAGGCG 
CGCACCGGCT TCACGATCGG CGGCGTGTCG CCGGTGGCGC ATGCCACGCC GCCGGTGGTG 
CTGATCGACC GCGAGCTGTT CCGCTTCGAG GAGATCTGGG CTGCCGCGGG CCATCCGCAT 
GCGGTGTTCC AGCTGCGCCC GCAAGACCTC GAGAAGCTCA CCGGCGCGCC GGTGGCGGAC 
GTGGTGTGA
 
Protein sequence
MCGAELHSLP EGVQRVSRML QDAGHPHSPR MLDDACRTAQ QAADALGILV GQIAKSIIFR 
RKSDDAAVLV ITSGDKRVDE KKVDALVGKT GRADAEFVKA RTGFTIGGVS PVAHATPPVV 
LIDRELFRFE EIWAAAGHPH AVFQLRPQDL EKLTGAPVAD VV