| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4704 |
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| Symbol | |
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| ID | 7971714 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5000528 |
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| End bp | 5001643 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795289 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002946575 |
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| Protein GI | 239817665 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAAGA TGTTGTCCAC GTCCCGCGCT GCTGCGCTGC TCTTCGCCCT GTCCGCGCTC
GGCGCGTCGG CGCAGATCGT GATCGGCCAG TCGGCCGACC TGTCGGGCCC GGTGGCCGCC
AGCGTGAAGG AAACCATCAT GGGCTCGCAG CTGGTCATCG ACCAGGTCAA CGCCCAGGGC
GGGATCAACG GCGAGCAGGT GGAGGTGATC CGGCTCGACG ACGGCCTGGA CGCGAAGCGC
TCGCTGGAGA ACACGCGCAT CCTGATCGAG GACAAGAAGG TGCTGGCGCT GCTGCTCAAC
CGCGGCACGC CCAACACCCT GGCCGTGATC CCGCTGCTCG ACAAGTACGG CGTGGCGCTG
GTGGGCCCTT CCACCGGCGC GATGGCGCTG CACAAGCCGC TGCAGAAGAA CATCTTCAAC
GTGCGCTCGA CCTACCAGCG CGAGGCTGAA AAAGCGGTGC AGCACCTGCA CACCACGGGC
ATCCAGCGCA TTGCCGTGGT GCAGGCCGAC GACTCCTTCG GCAAGGACGC GATGGAAGGC
GCGAGCAAGG GCTTCGAGAA GGCCGGGCTC GCACCGGCGG TGCTGGCGCT GGCCGACCGC
AGCAAGCCCG ACTATTCGGC GATCGTGCCG CAGCTGGTCA AGGCCAATGC GCAGGCGGTG
CTGTGGATCG GCTCGGGCAC CGCGGTGACC GAAGGCGTGA AGGCGCTGCG GGCCGCGGGT
TCGGCGGCGC AGATCATCAC GCTGTCGAAC AATGCGGCTT CGGGCTTCAT CAAGGAGCTG
GGCTCGGCCA GCGCCGGCGT GATCGTCACG CAGGTGCTGC CCTACGAGCG CTCGTTCGGC
CATCCGCTGA TCAAGGAGGC GATGGCGCTC GCCAAGGCCA AGGGGCAGAC CGAGCTGTCG
CCCGCGCTGC TCGAAGGCTT CGTCGCCACC AAGGTGATGG TGGAGGCGCT GCGCCGCACG
GGCCCCAAGC CCACGCGCGC CCGGCTGATT GCCACGCTCA ACAGCTTCCA GTACGACCTG
GGCGGCAACA TCGACGTGAG CTATTCGCCG ACGGACCACA CGGGCATCGA CTACGTCGAC
CTGTCGATCA TCAGCGAAGG CCGCTTCAAG CGCTGA
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| Protein sequence | MMKMLSTSRA AALLFALSAL GASAQIVIGQ SADLSGPVAA SVKETIMGSQ LVIDQVNAQG
GINGEQVEVI RLDDGLDAKR SLENTRILIE DKKVLALLLN RGTPNTLAVI PLLDKYGVAL
VGPSTGAMAL HKPLQKNIFN VRSTYQREAE KAVQHLHTTG IQRIAVVQAD DSFGKDAMEG
ASKGFEKAGL APAVLALADR SKPDYSAIVP QLVKANAQAV LWIGSGTAVT EGVKALRAAG
SAAQIITLSN NAASGFIKEL GSASAGVIVT QVLPYERSFG HPLIKEAMAL AKAKGQTELS
PALLEGFVAT KVMVEALRRT GPKPTRARLI ATLNSFQYDL GGNIDVSYSP TDHTGIDYVD
LSIISEGRFK R
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