| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4703 |
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| Symbol | |
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| ID | 7971713 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4999286 |
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| End bp | 5000392 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795288 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002946574 |
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| Protein GI | 239817664 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAGC TGCACGTTCT TTGCGCGGCC CTGCTCGCCC TGGCCGCGAC ATCCGCGCCG
GCCCAGGTCC TGATCGGCCA GACCGCGGGC ATGACCGGCT CGGTGGCCGC CAGCGTGAAC
GAAACCATCG GCGGCGCCCA GCTGTTGATC GACGCCGCGA ACGCCCAGGG CGGCGTGCAC
GGCGAGAAGA TCGAGGTGCT GCGCATGGAC GACGGCTTCG ACGTCAAGCG CGCCGCCGAG
AACGCCCGCG TGCTGCTCGA GGAGAAGAAG GTGGTGGCGC TCTTCATGAG CCGCGGCACG
CCGCATTCGC AGGCCATCAT CCCGTGGCTC GACAAGCACG ACGTGGCGCT GATCGGCCCT
TCGACCGGCG CCATGGTGCT GCACAGGCCG GTGCAGAAGC GCGTGTTCAA CGTGCGCGCC
ACCTACCAGC GCGAAGCCGA GAAGGCGATC CAGCACCTGC TCACCACCGG CATCGCGCGC
ATCGCCGTGG TGCACGTGAC CGATTCCTTC GGGCAGGACG CGCTCGAGGG CGCCATGACC
GGCTTCGCCA AGGCGCAGGC CAAGCCCGTC GTGACCGTGC CGGCCGACCG CGAGAAGCCC
GACTACAAGG CCATCGTGCC GGCCATCCGG GACGCCAATG CGCAGGCGGT GCTGTGGATC
GGCTCGGGCG TTGCCGTGGT CGAGGGCATC AAGGCGCTGC GCGCCTCCGG CTCGGCCGCG
CAGGTGGTCA CCCTGTCGAA CAACGCCTCG TCGGGCTTCA TCAAGCAGCT GGGCGATGCG
AGCAGGGGCG TGATCGTGAC CCAGGTGTTC CCGAACGAGC GCTCCATCAG CTACCCCATG
GTCAAGGAAG CGCTGGCGCT GGCGCGCGCC AAGGGCCAGG CCGAGCTGTC GCCGGCCGCG
CTCGAGGGCT TTGCCTCGGC CAAGGTGCTG CTCGAGGCGC TGCGCCGCGC CGGCCCCAAG
CCGACGCGCG CCAAGGTGCT GGCGGCGCTC GAGAGCCTGC GCGGCTACGA CCTCGGCGGG
CTCGAGATCA GCTACTCGCC GCAGGACCAT TCGGGCATCG ACTTCGCCGA TCTCGCGATC
ATCAGCGACG GCCGCTTCAA GCGCTGA
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| Protein sequence | MNKLHVLCAA LLALAATSAP AQVLIGQTAG MTGSVAASVN ETIGGAQLLI DAANAQGGVH
GEKIEVLRMD DGFDVKRAAE NARVLLEEKK VVALFMSRGT PHSQAIIPWL DKHDVALIGP
STGAMVLHRP VQKRVFNVRA TYQREAEKAI QHLLTTGIAR IAVVHVTDSF GQDALEGAMT
GFAKAQAKPV VTVPADREKP DYKAIVPAIR DANAQAVLWI GSGVAVVEGI KALRASGSAA
QVVTLSNNAS SGFIKQLGDA SRGVIVTQVF PNERSISYPM VKEALALARA KGQAELSPAA
LEGFASAKVL LEALRRAGPK PTRAKVLAAL ESLRGYDLGG LEISYSPQDH SGIDFADLAI
ISDGRFKR
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