Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4699 |
Symbol | |
ID | 7971709 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4989520 |
End bp | 4990338 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644795284 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_002946570 |
Protein GI | 239817660 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.607966 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCAAGC TTCCCCAATT CCCGGCCTAT GCCACCTTCG CCGACAAGCT CGGCTGGTGG GCGGTGCGCG CGGGCTGCAT CGCGGTGCTG GCCTTTCTGC TGGCGCCGAT CCTGGTGGTG ATTCCGCTGT CGTTCTCCGA CAGCTCGTTC CTGGCCTACC CGATCCGGGG CTGGTCGCTG CAGTGGTACC GCAACCTCTT CGATTCGCCC GAGTGGGGGC GCGCGGCACG CAACAGCTTC ATCGTTGCGC CGGCCGCCAC GGTGCTGGCC ACTGTGCTGG GCACGCTGGC GGCGGTGGGG CTGTCGCGCA CGAGCTTCGC CTTCAAGGGC CTGCTCATGA GCGTGCTGAT CTCGCCGATG GTGGTGCCGA TCGTGGTGGT GGGCGTCGCC ACGTATCTCT ACTTCGCGCC GCTCGGGCTG GCCGACACCT ACATCGGGCT GATCGTGGTG CATGCGGCGC TGGGTGCGCC CTTTGTGCTG ACCACCGTGC TGGCCACGCT GGCGGGCTTC AACCACAACT TGGTGCGTGC ATCGCTGAGC CTGGGCGAGA CACCGTTCAG AACCTTCATG CGCGTCACGC TGCCGGTGAT TGCGCCGGGC GTGATCTCGG GTGCGCTGTT CGCCTTTGCC ACCTCGTTCG ACGAAGTGGT GGTCACCTTG TTCCTCGCGG GGCCCGATCA GGTGACCTTG CCGCGCCAGA TGTTCACCGG CATCCGCGAG AACATCTCGC CCACCATCGC CGCCGTGGCA ACGCTGCTGA TCGTCTTCAC CACCACGCTG CTGCTCGCGC TCGAATGGCT GCGCGGCCGG CGGCGCTGA
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Protein sequence | MFKLPQFPAY ATFADKLGWW AVRAGCIAVL AFLLAPILVV IPLSFSDSSF LAYPIRGWSL QWYRNLFDSP EWGRAARNSF IVAPAATVLA TVLGTLAAVG LSRTSFAFKG LLMSVLISPM VVPIVVVGVA TYLYFAPLGL ADTYIGLIVV HAALGAPFVL TTVLATLAGF NHNLVRASLS LGETPFRTFM RVTLPVIAPG VISGALFAFA TSFDEVVVTL FLAGPDQVTL PRQMFTGIRE NISPTIAAVA TLLIVFTTTL LLALEWLRGR RR
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