| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4694 |
|---|
| Symbol | |
|---|
| ID | 7971704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4983158 |
|---|
| End bp | 4984567 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644795279 |
|---|
| Product | transcriptional regulator, GntR family with aminotransferase domain |
|---|
| Protein accession | YP_002946565 |
|---|
| Protein GI | 239817655 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.56864 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCATTC TTCGCCCCGA ACAGCCGACG CCGCTGGTCA GCCAGATCGT GGAAGGGTTA
CGCGGACTGA TCGGCTCCCA GAAGCTCAAG GCCGACAGCA AGTTGCCGTC GATCCGCGCC
TTTGCCGCGA CCCACGGCGT CAGTGTGTTC ACGGTGGTCG AGGCCTACGA CCGGCTGGTG
GCGCAGGGCC TCCTGGTCTC GCGCGCCAAC GCCGGCTTCT TCGTCAAGCG GCGCATCGAG
GACAGCGCCG CCGGCGCGGC CAGTGCGCCC CGCCCGGACC CCCGCTTCGA CGCCCGCTGG
TACCTGCAGC AGATCTTCGA GAACCGCAAC CTGCCGCTCA AACCCGGCTG TGGCTGGCTG
CCGCACGACT GGCTGTTCGA GGACGGCATG CGCCGGAGCC TTCGCCACCT GGCTTCCGAA
GGCGCCGACA TCGGCGGCTA CGGCCTGCCC TTCGGCCACA TGGCGCTGCG CATGGCGACG
GCCGAGGCGC TCTCGGAGCA GCAGATCGTG GTCGACGCCG CCCAGGTGCT GCTGACCCAG
GGTTCCAGCC AGGCGCTGGA CCTGGTGGCG CGCCGCCTGC TCAAGCCGGG CGATTCGGTG
CTGGTGGACG ACCCGGGCTA TCCGAACCTG ATGTTCATGC TCCGCTTCCT GGGCGTGGAG
ATCGTCGGCG TGCCGCGCAT CCCCACGGGC TACGACATGC CGGCGCTCGA GGCGCTGCTC
GCGGCGCATC GGCCCAAGGC TTTCTTCACC CAGCCCCGGC TGCAGAGCCC GACCTGCTCG
ATGGCCTCGC TGCCGCAGCT GGTGCAACTG CTGCAGCTCG CGCAGGCACA CGACTTCACG
CTGGTCGAGA ACGACATCTA TGCCGAGATG GACGCCTCGA TGCGCCCCTC GCTCGCCAGC
CTGGGACAGC TGCGCCGCGT GGTCTACGTG GGCAGCTACT CGAAGACCAT CTCGCCCAAC
ATCCGCGTCG GCTACGTGGT CGCCCGGCCG GAGCTGCTCG AAGAGCTGGC GCAGCTCAAG
ATGATCTCGG GCCTGACCTC GTCCGATATC ACCGAGCGGC TGGCCTTCGG CATCGTGACC
GATGGCCGCT GGCGCAAGCA CCTCAAGTCG CTGCGCGAGC GCCTCGCGCA GGCGCAGGGC
AGCGTCGCGC GGCGGCTGGA CGGGCTGGGC TTCGAGCTGT TCCACGAAGC CGCGGCCGGC
ATGTACCTGT GGGCGCGGCA CCCGGACATT GCCGACAGCG CCGAGCTCTC GCGGCGCGCC
GCGGCCGAGG GCATCATGCT CGGCCCGGGC CAGCTGTTCC TGGTCAATCC GCATCCCACC
GGCTGGCTGC GCTTCAACGT GGCCTTCAGC GAAGACGAGC GGCTCTGGCG CTTCCTGGAG
CGCAGCATCG AAGAGCACAG GCACGACTGA
|
|---|
| Protein sequence | MLILRPEQPT PLVSQIVEGL RGLIGSQKLK ADSKLPSIRA FAATHGVSVF TVVEAYDRLV
AQGLLVSRAN AGFFVKRRIE DSAAGAASAP RPDPRFDARW YLQQIFENRN LPLKPGCGWL
PHDWLFEDGM RRSLRHLASE GADIGGYGLP FGHMALRMAT AEALSEQQIV VDAAQVLLTQ
GSSQALDLVA RRLLKPGDSV LVDDPGYPNL MFMLRFLGVE IVGVPRIPTG YDMPALEALL
AAHRPKAFFT QPRLQSPTCS MASLPQLVQL LQLAQAHDFT LVENDIYAEM DASMRPSLAS
LGQLRRVVYV GSYSKTISPN IRVGYVVARP ELLEELAQLK MISGLTSSDI TERLAFGIVT
DGRWRKHLKS LRERLAQAQG SVARRLDGLG FELFHEAAAG MYLWARHPDI ADSAELSRRA
AAEGIMLGPG QLFLVNPHPT GWLRFNVAFS EDERLWRFLE RSIEEHRHD
|
|---|
| |