| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4692 |
|---|
| Symbol | |
|---|
| ID | 7971702 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4980888 |
|---|
| End bp | 4981949 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644795277 |
|---|
| Product | Histone deacetylase |
|---|
| Protein accession | YP_002946563 |
|---|
| Protein GI | 239817653 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.173382 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGGGCG GCATGCTCAC CATCTACAAC GACCAGCACG CGCTGCACCA GGGCAAAGTC
GAGATGTTCC GCGGCGAACT GGTGCCGTGC TTCGAGGTGC CCGCCCGCGT CGACCATGTG
AAACATGAAC TGGAGCGCCG CGGCCTGGGC CCGCTGCAGG TGCCCGATGC CTTCGACGAG
GCGCTGTTGG CCAGGGTGCA CGCGCCGCGC TACCTGGACT TCATTGCGCA TGCCTGGGAC
GAGTGGGTGG CGCTCGATCC GTCGAACGCA TCGCGCGATG CGCTGCCTTC GTACTGGCCC
ACGCGCGGCA TGCGCACCGA CGTGCTGCCG AAGAGCTTTC CTGCGCGCAT GGGGCTGTTC
TCCTTCGACG CGGGCACGCC GCTCATGGCC GGCAGCTGGG CCGCCGCGCG CCACGGCGCC
GCCTGCGCCT GGACCGCGGC GCAGCGCGTC ATCGGCGGCG AGCGCGCCGC CTTCGCACTC
ACGCGGCCGC CCGGCCACCA TGCGGGCGCC GATTTCTTCG GCGGCTACTG CTTCGTCAAC
AACGCTGCCG TGGCCGCGCA GGCGCTGCGC GATGCGGGCG TGGAGCGGGT GGCGGTGCTC
GACGTGGACT ACCACCACGG CAACGGCACG CAGGCCATCT TCTATGAGCG CAGCGACGTG
CATTTCGCGA GCCTGCATGG CGATCCGCTG ACCGACTATC CCTACTACCT GGGCCATGCC
GACGAGCGCG GCGCGGGCGC CGGGCTCGGC TTCAACCACA ACCTGCCGCT CGCGCGCGGC
ACCGGCTTCG CCGCATGGCG CGCGGCGCTG AAGGCCGCGC TCGACGGCAT TGCCGCGGTG
CGCGCGGGCG CGCTGGTGGT GTCGCTCGGC GTCGACACCT TCGAAGGCGA CCCGGTCGCG
GGCTTCCGGC TCCGGAGCGA CGACTACCTG CGCATGGGCG AAGACCTGGC GCGCGCCGGC
CTGCCGACGG TGTTCGTGTT CGAGGGCGGC TACGCGGTGG CCGAGGTGGG TGTCAACGCG
GTCAACGTGC TGCAGGGATT CGAGCAGCAG GCCGCGGGCT GA
|
|---|
| Protein sequence | MMGGMLTIYN DQHALHQGKV EMFRGELVPC FEVPARVDHV KHELERRGLG PLQVPDAFDE
ALLARVHAPR YLDFIAHAWD EWVALDPSNA SRDALPSYWP TRGMRTDVLP KSFPARMGLF
SFDAGTPLMA GSWAAARHGA ACAWTAAQRV IGGERAAFAL TRPPGHHAGA DFFGGYCFVN
NAAVAAQALR DAGVERVAVL DVDYHHGNGT QAIFYERSDV HFASLHGDPL TDYPYYLGHA
DERGAGAGLG FNHNLPLARG TGFAAWRAAL KAALDGIAAV RAGALVVSLG VDTFEGDPVA
GFRLRSDDYL RMGEDLARAG LPTVFVFEGG YAVAEVGVNA VNVLQGFEQQ AAG
|
|---|
| |