Gene Vapar_4690 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4690 
Symbol 
ID7971700 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4978954 
End bp4979781 
Gene Length828 bp 
Protein Length275 aa 
Translation table11 
GC content71% 
IMG OID644795275 
ProductHAD-superfamily hydrolase, subfamily IIB 
Protein accessionYP_002946561 
Protein GI239817651 
COG category[R] General function prediction only 
COG ID[COG0561] Predicted hydrolases of the HAD superfamily 
TIGRFAM ID[TIGR01484] HAD-superfamily hydrolase, subfamily IIB 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCTCGC CGACTTCCCT TCCGCCCTCG CCCACCCACC TGCTGCCGCT GGACCGCTGG 
GCCGCGCCCA CGCGCCATGC GCTCGCCGGC GTGTTCACCG ACATCGACGA CACGCTCACC
ACCGAGGGCG CGATCACGCC CGATGCACTG CAGGCCCTCG GCGCTCTCAA GGCCGCGGGC
CTTGCCATCG TGGCGATCAC GGGCCGGCCC GTCGGCTGGA GCCTGCCCTT CGTCAACACC
TGGCCGGTCG ATGCGATCGT GGCGGAGAAC GGCGCGGTGG CGCTGCTGCC CGCGGCCGAT
GGCAGGATCG AGAAGCGCTA CATGCAGGAT GCGCCCACGC GCACCGCCAA CTTCGAGCGC
ATGCAGGCCG TGCTGGCGCG CATCGAGCGC GAGATCCCGG GCGCGCAGCG CGCCACCGAT
TCACCGGGCC GCGAGACCGA CATCGCCATC GACCACAGCG AGTTCGTGCA GCTGGGCGAA
GAAACCATCG CACAGGTCGT CGCGCTGATG CGCAGCGAAG GCATGCACGC CACCGTGAGC
AGCATCCACA TCAACGGCTG GTACGGCGAC AACGACAAGC TCGAAGGCGC ACGCTGGATC
GTGCGCGAGC TCTGGGGCCG AACGCTCGAC GACGAACTCG ACCGCTGGGC CTACGTGGGC
GACTCCACCA ACGACCAGCT CATGTTCCGC ACCTTCGCGA GCAGCATCGG CGTGGCAAAC
GTCGCGCGCT TCGTGCCGCA GCTGGAGCAC CTGCCGCGCT ACGTGACCGA GGGCGAGCGC
GGCGCGGGCT TTGCCGAGGC GGCGCGCGCG GTGCTGTCGG CGCGCTGA
 
Protein sequence
MPSPTSLPPS PTHLLPLDRW AAPTRHALAG VFTDIDDTLT TEGAITPDAL QALGALKAAG 
LAIVAITGRP VGWSLPFVNT WPVDAIVAEN GAVALLPAAD GRIEKRYMQD APTRTANFER
MQAVLARIER EIPGAQRATD SPGRETDIAI DHSEFVQLGE ETIAQVVALM RSEGMHATVS
SIHINGWYGD NDKLEGARWI VRELWGRTLD DELDRWAYVG DSTNDQLMFR TFASSIGVAN
VARFVPQLEH LPRYVTEGER GAGFAEAARA VLSAR