Gene Vapar_4651 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4651 
Symbol 
ID7972862 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4942838 
End bp4944292 
Gene Length1455 bp 
Protein Length484 aa 
Translation table11 
GC content71% 
IMG OID644795236 
Producttranscriptional regulator, GntR family with aminotransferase domain 
Protein accessionYP_002946522 
Protein GI239817612 
COG category[K] Transcription
[E] Amino acid transport and metabolism 
COG ID[COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCGCT ACGAAGCCCT TGCCGCCGAC ATCGAGGCGT CGATCCGCCA CGGCACGCTC 
AAGACCGGCG ACCGGTTGCC CTCGGTGCGG CACACCGGCG AGAGCCGAGG CGTGAGCGCC
TCCACCGTGT TCCAGGCGTA CTACCTGCTG GAGGCGCGCG GCCTGGTGCG CGCGCGGGAC
CGCTCGGGCT ACTACGTCAC CGGCGGCGGG CTGCGCGATG CGCCGCCCGA GGCCAACCTC
ACCTCGCGCC CGGCCGAGGG GCCCAGGTCG CTCGACGTGA GCGACCACGT GTTCGACATC
CTCGAGGCCA GCATGTCGCG CAAGGTGGTG CCCTTCGGCT CGGCGTTTCC GAGCCCGCTC
CTGTTTCCGC TGGCACGGCT GGGCCAGTTC ATGGCCGCGA GCGCCAAGTC GCTCGACCCG
TGGAGCACCG TGGACGACCT CACGCCCGGC AGCGCGGCGC TGCGCCGGCA GATTGCGCTG
CGCTACCTGG GCGACGGCAT GCAGGTGGCG GCCGACGAAA TCGTCGTCAC CAACGGCGCG
CTGGAGGCGC TCAACCTGTG CCTCGCGGCG GTCACGCGCC CCGGCGATTC GGTGATCGTC
GAATCGCCCA CCTTCTATGC GGCCCTGCAG GCGCTGGAGC GCATGGGCCT GCGCGCCATC
GAGGTGCCGA CGCATCCCGG CGAAGGCATC GACCTGGCCG CGCTGGAGCT TGCCATCGCG
GCCCACCAGC CCAAGGCCTG CTGGCTCATG ACCACCTTCC AGAACCCGCT CGGCAGCCTG
ATGCCCGACG CGAAGAAGAA GGCGCTGGTC GAACTGCTCG CACGGCACGC GCTGCCATTG
ATCGAGGACG ACGTGTACGC CGAGCTCTAC TTCGGCGACC GGCGCCCGCC GCCGGCCAAG
GCCTTCGACA CGCAGGGACT GGTGCTGCAT TGCTCGTCGT TCTCGAAATG CCTGGCACCG
GGCTACCGCA TCGGATGGGC ATCGGCCGGG CGCTTTGCGC GCAACGTGGC GCGCTTGAAG
CTGACGACCA CGCTCAGCAC CTCGGTGCCC GCGCAGCTCG CGCTCGCAAG CTACCTGGAA
AAAGGCGGCC TCGACAAGCA CCTGCGCAAG CTGCGCCAGG TCCTGGCCGT GCAGCAGGCG
AGCTTTGCGC AGGCAGTGGG CCACTACTTT CCCGCGGGCA CGCGCGCCAC GCGGCCGCTG
GGCGGCTACT TCATGTGGGT CGAGCTGCCG GCGCAGGTCG ATGCGCTCGC CATCCACGCC
CAGGCGCTGG AGCGCGGCAT CAGCGTGGCG CCCGGGCCCA TCTTCTCGGC CACGCGCGGC
TTCGCGCACT GCCTGCGCCT GAACTACGGG CATGCCTGGG ACGCGCAGAG CGAAAAGGCG
ATGCAGACCC TGGGGCGATT GGTGGCAGCC GCCGCGGCAG GCAGCCCGCC GCGCGAGAAA
ATCGCGCTGC CGTGA
 
Protein sequence
MKRYEALAAD IEASIRHGTL KTGDRLPSVR HTGESRGVSA STVFQAYYLL EARGLVRARD 
RSGYYVTGGG LRDAPPEANL TSRPAEGPRS LDVSDHVFDI LEASMSRKVV PFGSAFPSPL
LFPLARLGQF MAASAKSLDP WSTVDDLTPG SAALRRQIAL RYLGDGMQVA ADEIVVTNGA
LEALNLCLAA VTRPGDSVIV ESPTFYAALQ ALERMGLRAI EVPTHPGEGI DLAALELAIA
AHQPKACWLM TTFQNPLGSL MPDAKKKALV ELLARHALPL IEDDVYAELY FGDRRPPPAK
AFDTQGLVLH CSSFSKCLAP GYRIGWASAG RFARNVARLK LTTTLSTSVP AQLALASYLE
KGGLDKHLRK LRQVLAVQQA SFAQAVGHYF PAGTRATRPL GGYFMWVELP AQVDALAIHA
QALERGISVA PGPIFSATRG FAHCLRLNYG HAWDAQSEKA MQTLGRLVAA AAAGSPPREK
IALP