| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4632 |
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| Symbol | |
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| ID | 7972842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4922393 |
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| End bp | 4923451 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795216 |
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| Product | TIM-barrel protein, nifR3 family |
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| Protein accession | YP_002946503 |
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| Protein GI | 239817593 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTTGC AGATCGGCAC CCACACGCTG GAAAACCGCC TGTTCGTCGC GCCCATGGCC
GGCGTGACGG ACCGGCCGTT CCGCATGCTG TGCCGTGAAC TCGGCGCCGG CTATGCGGTC
AGCGAGATGG TCACCTCGCG CAAGGAACTC TGGAACACGC TCAAGACCTC GCGCCGCGCC
AACCACGACG GCGAGCCCGG TCCCATCGCG GTGCAGATTG CCGGCACCGA TGCGGCCATG
ATGGCCGAGG CCGCGGTCTA CAACATCGAG CGCGGCGCGC AGATCATCGA CATCAACATG
GGCTGCCCGG CCAAGAAGGT CTGCAACAAG TGGGCCGGTT CGGCGCTGAT GCGCGACGAG
CCGCTGGCGC TTGAAATCGT GCAGGCCGTG GTCGATGCAG CGCAGCCCCA CAACGTGCCG
GTCACGCTCA AGATGCGCAC CGGCTGGAGC GAAGAGCACC GCAACGCGGT GAAGCTCGCG
CGCGATTTCG AATCGGCCGG CGTGCAAATG CTCACTGTCC ATGGCCGCAC CCGCGAGCAA
GGCTACAAGG GCAGCGCCGA GTACGACACC ATTGCCGCCG TGAAGGCCGC GGTGCGCGTG
CCGGTGGTGG CCAACGGCGA CATCCGCTCG CCCGAGAAGG CGCGCGAAGT GCTCGCGGCC
ACGGGCGCCG ACGCGGTGAT GATCGGCCGC GCCGCGCAGG GGCGGCCCTG GATCTTCCGC
GAGATCGCCC ATTTCCTGGC CACGGGCACG CACCTTGCGC CGCCGCTTGT CGCCGAAGTG
CGCCGCCTGC TGCTCGACCA CCTGGTGGAG CACTACGCGC TCTACGGCGA ATTCAGCGGC
GTGCGCACCG CGCGCAAGCA CATCGGCTGG TATGTCCGCA CGCTGCCGGA CGGCGAAGCC
TTCCGCGCAC GGATGAACAC CATCGAAGAC TCCGCTGCGC AACTGCGCGC GGTCGGCGAT
TATTTCGACG GGTTGGCGGA CCGCATGGAC CGCATGCCCG TGCACCAGGC GGCCGAAGAG
CTGTCCGGTG AAGAGGAGGC GGCCTGCGCC GCCGGTTGA
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| Protein sequence | MTLQIGTHTL ENRLFVAPMA GVTDRPFRML CRELGAGYAV SEMVTSRKEL WNTLKTSRRA
NHDGEPGPIA VQIAGTDAAM MAEAAVYNIE RGAQIIDINM GCPAKKVCNK WAGSALMRDE
PLALEIVQAV VDAAQPHNVP VTLKMRTGWS EEHRNAVKLA RDFESAGVQM LTVHGRTREQ
GYKGSAEYDT IAAVKAAVRV PVVANGDIRS PEKAREVLAA TGADAVMIGR AAQGRPWIFR
EIAHFLATGT HLAPPLVAEV RRLLLDHLVE HYALYGEFSG VRTARKHIGW YVRTLPDGEA
FRARMNTIED SAAQLRAVGD YFDGLADRMD RMPVHQAAEE LSGEEEAACA AG
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