| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4607 |
|---|
| Symbol | |
|---|
| ID | 7973305 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4891709 |
|---|
| End bp | 4893799 |
|---|
| Gene Length | 2091 bp |
|---|
| Protein Length | 696 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644795191 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_002946478 |
|---|
| Protein GI | 239817568 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2205] Osmosensitive K+ channel histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.998833 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTCG ACGTCGAAAC CACCCCGGCG GGTCCGGGCC GCCTGCTTGT TCTTCTGTTC
CTGCTGCTGT GGTGCTTGGC AATGCCCGCC AGGGCGCTGG TACTGTCGGC TTCCGATGGC
CTCGACCGCG GCATCCCACT CTCCGGGGAC CTCGAGATCC AGCGCGACCC CTCGGGCGGG
TGGCGTATCG CCGACGTCGC GCGCGGCGCG CAGCGAAGCG GCTTCGTGCC GCTCGAAGGG
CCGGTGGAGG AAGGCTTCAG CCGCGACGCT GTGTGGCTGC GCTTCTCGCT CGCGCGCACG
GTCGATGCGC CCGCGCGATG GCTGCTGCGC GTGCGACCGC CGCGCATCCA CGAAGCCACC
TTGTATGCGC CGGACGGGCG CGGCGGCTTC GTCGAGACGC CGCTCGGCGA CGCCCGCCCT
TTCGCGGCGC GCGAGATCCC CGACCACGAC TTCGCGTTCC CGGTCGACCT GCCGACCGAG
CCGGCTGTCT ATTTCCTGCG GCTGCGCAAC GACGGGCCGC CGCTGCGGGC CGAACTGGAC
CTGTGGCAGC CTGCCGGCTT CGAGCGCGAC CGCACGGCCG ACTACACCAT CATGGGCGTG
CTGCTTGGCG CCGCTCTGCT CGCCGTCTGC ATGAACCTGA TCTTCGGGGC CTGGCTGCGG
GACGGGCTCT ACGCCCATTA CGCGCTGTAC GTGTTCTGCA TCGCGGCTCT GTCGGTCAAC
CGCCAGGGGT TCGCAGCGCA GTGGTTCCTC GGCGACCGCC CCGAGCGCGT TGCGCAGACG
CTGCTGGTCG TCAACTGCTT CTTCAACATG GTGGGTACCG CGTTCATGGC GCGCATCTTC
CAGTTTCGGC GCCACTGGCC GCCCGCGGCA CATTTCTTCA ACGCGGTCGT GGTGTACAAC
TTCGTTGCGT TCGTGCTGGC CCTGGCCGGC CATCACGCCG CCATCGCCCC CTGGGTCAGC
GCGGGCAGCG CCGCGTCCAC GCTGTTCGGT GCGGTCTTCG TCTGCTACCT GCTCTTCGTG
CGGCGCCAGT TCCAGTACCT GCTGCCTGCC TCGGCCTTCG CGGTGGGAAC GGTGCTCGGG
CTCTACGGGC TGTTGAAGCT CTGGCTCGGC GACCAGGTGC CCGGCGTGAC ACCTGATCGC
CTCTATTGGC TCGGCACCAT GTGCCACCTC GTCCTGCTGA ACGTGGCCGT GGCCGACCGG
ACGCGGCGCG CCGAGCGCGA TTACCGCGCC GAGCGCGAGC GCGTGCTCGC AGTGCGGCTG
GAAGCCGAAC AGGCGCTCGA AGGCACGGTC GTGCGACGCA CCGCCGAACT GCAGCAGACC
AATGCCGCGC TGCATGAGGA GATCGCGGCC CGCGCCCGTC TGGAGGCCCG GCTGCGTGAG
TCGCTCGAGG TCGAGCGCCA GGCGATCGTG CAACAGCGCG AGTTCGTCTC GATGGTGTCG
CACGAGTTCC GCACGCCCTT GACCGTGATC GACGGCGCGG CGCAATCGCT CGACATCTCG
AAGCTCGGCG GGGAGCCGGT GGTGAAGCAG CGCACCGAGC GGATCCGGCG CGCCGTGCAG
CGCCTGACCA TGCTGATCGA GAACATCCTG CTGGCCGACC GCCTCCAGCC CGAGAACCGG
ATGCTTCGCC TCGAAGTCGT TGACATGGCG GCGCTCGCGC GTGGCCTGTG CGAGAGCTTC
CACTTTCCCG GCGCTTCGCG CCTGTCCATC GACGTGCGCG AACCCCTGCC CAAGGTGCGC
GGCGATCGAG CGCTGCTCGA GATCGCGCTG CAGAACCTGA TGCAGAACGC ATTGAAGTAC
TCGCCGCCGG AGCAACCGGT GCATGTCGTG CTGCGGCACA CGGGCGGCAT CGTGCAGGTC
GACGTGATCG ACCGCGGACC CGGAGTCGCA ATGGCCGACA AGGCCCGCAT CTTCGAGAAA
TATTTCCGTG CCGAAACCGC GAGCGCGGTG GCCGGCACCG GACTGGGACT TCACCTGTCG
CGCGAGATCG CGATGCGCCA TGGCGGCGAC GTGACACTGC ACGACACAGG CGCCAGCGGG
TCAACGTTCC GCCTCGTGCT TCCGGCTGCG CCGCCTGAAC AAGTCACATG A
|
|---|
| Protein sequence | MRLDVETTPA GPGRLLVLLF LLLWCLAMPA RALVLSASDG LDRGIPLSGD LEIQRDPSGG
WRIADVARGA QRSGFVPLEG PVEEGFSRDA VWLRFSLART VDAPARWLLR VRPPRIHEAT
LYAPDGRGGF VETPLGDARP FAAREIPDHD FAFPVDLPTE PAVYFLRLRN DGPPLRAELD
LWQPAGFERD RTADYTIMGV LLGAALLAVC MNLIFGAWLR DGLYAHYALY VFCIAALSVN
RQGFAAQWFL GDRPERVAQT LLVVNCFFNM VGTAFMARIF QFRRHWPPAA HFFNAVVVYN
FVAFVLALAG HHAAIAPWVS AGSAASTLFG AVFVCYLLFV RRQFQYLLPA SAFAVGTVLG
LYGLLKLWLG DQVPGVTPDR LYWLGTMCHL VLLNVAVADR TRRAERDYRA ERERVLAVRL
EAEQALEGTV VRRTAELQQT NAALHEEIAA RARLEARLRE SLEVERQAIV QQREFVSMVS
HEFRTPLTVI DGAAQSLDIS KLGGEPVVKQ RTERIRRAVQ RLTMLIENIL LADRLQPENR
MLRLEVVDMA ALARGLCESF HFPGASRLSI DVREPLPKVR GDRALLEIAL QNLMQNALKY
SPPEQPVHVV LRHTGGIVQV DVIDRGPGVA MADKARIFEK YFRAETASAV AGTGLGLHLS
REIAMRHGGD VTLHDTGASG STFRLVLPAA PPEQVT
|
|---|
| |