Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4587 |
Symbol | |
ID | 7973285 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4857116 |
End bp | 4857820 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644795172 |
Product | hypothetical protein |
Protein accession | YP_002946459 |
Protein GI | 239817549 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCTCGCCC GCATTGTTCT CAAGCGAGGA GGCAAGCACG AGGGGGAAAG TCCATTCTGG ATTTCGTTCT CCGACCTCAT GTCTGCACTG ATGGTGTTGT TCTTGGTGGT GATGGCGGTA ACTCTGGTGG CAGTCACCCA GAGCATCGAC TCGGCGACCC GCGCCACCAT TGAGCGGAGC GCCGCCATCA ACAAAGTGAT GGCGATGATT GCCAACGACC CGAAGAGCAC TGGCGTTGGC GTTGATCAGC AGAACTACCG CATCAACCTC GGCAAGGAGG TTCGCTTTGA TAGCGGTAGA TTCACCATCA GCGTTCCGGC CGCTCAGTTC CTTCGGAGTT ACATCCCAGT GCTGTTGACA GCGAAGGACA CGCCAGAGGG CATGCGCTGG ATGCGCAGCG TGGTCGTTGA GGGATTCACC GACGAGGACG GTACTTATCT GTACAACTTG CAATTGAGTC TTGACCGCAG CCGAAGTGTG GTCTGCTCGC TCTTTCAGAG TGCCGCTGGC AACGATAGTC TCTCGGCGGA ACAGCTTCGA AAGGTCCAGG AGCTTTTCCT TGTCGGCGGC TACTCCTTCA ATTCCATCAA GAAAGACAAG TCGGAGAGTC GGAGAGTCGA ATTCAAGGTC GACTTCTGGG GCCTGGAAGA AAAAAGACCG GAGGTCACGG ACGTACTTCA AGGTAAGGAG TTCGGGAAAT GCTAG
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Protein sequence | MLARIVLKRG GKHEGESPFW ISFSDLMSAL MVLFLVVMAV TLVAVTQSID SATRATIERS AAINKVMAMI ANDPKSTGVG VDQQNYRINL GKEVRFDSGR FTISVPAAQF LRSYIPVLLT AKDTPEGMRW MRSVVVEGFT DEDGTYLYNL QLSLDRSRSV VCSLFQSAAG NDSLSAEQLR KVQELFLVGG YSFNSIKKDK SESRRVEFKV DFWGLEEKRP EVTDVLQGKE FGKC
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