Gene Vapar_4587 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4587 
Symbol 
ID7973285 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4857116 
End bp4857820 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content56% 
IMG OID644795172 
Producthypothetical protein 
Protein accessionYP_002946459 
Protein GI239817549 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCTCGCCC GCATTGTTCT CAAGCGAGGA GGCAAGCACG AGGGGGAAAG TCCATTCTGG 
ATTTCGTTCT CCGACCTCAT GTCTGCACTG ATGGTGTTGT TCTTGGTGGT GATGGCGGTA
ACTCTGGTGG CAGTCACCCA GAGCATCGAC TCGGCGACCC GCGCCACCAT TGAGCGGAGC
GCCGCCATCA ACAAAGTGAT GGCGATGATT GCCAACGACC CGAAGAGCAC TGGCGTTGGC
GTTGATCAGC AGAACTACCG CATCAACCTC GGCAAGGAGG TTCGCTTTGA TAGCGGTAGA
TTCACCATCA GCGTTCCGGC CGCTCAGTTC CTTCGGAGTT ACATCCCAGT GCTGTTGACA
GCGAAGGACA CGCCAGAGGG CATGCGCTGG ATGCGCAGCG TGGTCGTTGA GGGATTCACC
GACGAGGACG GTACTTATCT GTACAACTTG CAATTGAGTC TTGACCGCAG CCGAAGTGTG
GTCTGCTCGC TCTTTCAGAG TGCCGCTGGC AACGATAGTC TCTCGGCGGA ACAGCTTCGA
AAGGTCCAGG AGCTTTTCCT TGTCGGCGGC TACTCCTTCA ATTCCATCAA GAAAGACAAG
TCGGAGAGTC GGAGAGTCGA ATTCAAGGTC GACTTCTGGG GCCTGGAAGA AAAAAGACCG
GAGGTCACGG ACGTACTTCA AGGTAAGGAG TTCGGGAAAT GCTAG
 
Protein sequence
MLARIVLKRG GKHEGESPFW ISFSDLMSAL MVLFLVVMAV TLVAVTQSID SATRATIERS 
AAINKVMAMI ANDPKSTGVG VDQQNYRINL GKEVRFDSGR FTISVPAAQF LRSYIPVLLT
AKDTPEGMRW MRSVVVEGFT DEDGTYLYNL QLSLDRSRSV VCSLFQSAAG NDSLSAEQLR
KVQELFLVGG YSFNSIKKDK SESRRVEFKV DFWGLEEKRP EVTDVLQGKE FGKC