Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4466 |
Symbol | |
ID | 7972754 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4712421 |
End bp | 4713113 |
Gene Length | 693 bp |
Protein Length | 230 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644795055 |
Product | cytochrome c class I |
Protein accession | YP_002946343 |
Protein GI | 239817433 |
COG category | [C] Energy production and conversion |
COG ID | [COG2863] Cytochrome c553 |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.657614 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAACAAGT TGTTGACCAC GATGTTTGCC TTCGCTGTCG CTTGCGTGAC GGTCTCGGCG CAAGCCCAGC AAGTCACGGG CAATGCCCAG GAGGGTGCCA AGAAGGTTGC CATGTGCGTG GGTTGCCACG GCATCATCGG CTACCAGGCC AGCTTTCCGG AGATCCACAA GGTCCCGATG ATCGCCGGCC AGAGCGCCAG CTACATCACC TCGGCCCTTA CCGCCTACAA GGGCGGCGAC CGCAAGCACC CCACCATGCG CGCGATTGCC GACACCCTGA AGGAACAGGA CATCGCCGAC CTGGCCGCCT ACTACAGCCA GCTGGGCCTG AAGGAAGGCG ACGCGCCCCC GGCCGCGCTG GCCAAGCCCA TGCCCGAGAA CGTGCAGGCC CTGGTGTCGC GCGACAAGGA CAACAGCTGC ACCAAGTGCC ACGGCGCCAA CTTCAGCACG CCCAATGACG GCACGGTGCC CAAGCTGGCC GGCCAGCATG CCGACTACCT CTTCGTGGCG CTCAAGTCGT ACCGCGTGAA GAACAACCTG CACCTGGGCC GCTCGAATGC GGTGATGGCA CAGCAGGTCG AGCCCAAGAA GTTCAGCAAC GCCGAACTCA AGACGCTCGC GAGCTACATC AGCTCGCTGC CCGGCGACCT CAAGACGGTG CCGGAATCGC GCATCCACCG CGCCGCCGAG TAA
|
Protein sequence | MNKLLTTMFA FAVACVTVSA QAQQVTGNAQ EGAKKVAMCV GCHGIIGYQA SFPEIHKVPM IAGQSASYIT SALTAYKGGD RKHPTMRAIA DTLKEQDIAD LAAYYSQLGL KEGDAPPAAL AKPMPENVQA LVSRDKDNSC TKCHGANFST PNDGTVPKLA GQHADYLFVA LKSYRVKNNL HLGRSNAVMA QQVEPKKFSN AELKTLASYI SSLPGDLKTV PESRIHRAAE
|
| |