| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4456 |
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| Symbol | |
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| ID | 7972744 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4698703 |
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| End bp | 4700019 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795045 |
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| Product | type I secretion membrane fusion protein, HlyD family |
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| Protein accession | YP_002946333 |
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| Protein GI | 239817423 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.715639 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAATCAG ATTTGCCGCA GATACTGCAG GACGAGGATC ACAAGCGCGC GGCGCAGACA
TCGCCCAAGG GCCGGCGCCG CAAGTGGGTC ATTGGCGGCG CGGTTGCGCT GCTGGCCGCT
GTCGGGCTGG GCTTTCCCAT GGAAACCGTG GTGGTGGCAC CGGGCCGCGT GATCCCGTCG
GACCGCGTCA AGTCGATCCA GCATCTGGAA GGCGGCATCG TCAGCAGCGT GCTGGTCAAG
GAAGGCGACA AGGTCACGCA GGGCCAGCCG CTGGTGGAGA TCGACCTGGG CGGCAGCGGG
CTCAATTTCG AGGAACTCAC CGCGCGCTAC GCCGCCACGC AGGCCACCCG CATCCGGCTC
ATGGCCGAGA GCCGCGGCCA GCCGCTCAGG CGCGAGAGCT TTGCCGCCGA CATCGACGAG
AGCGTGCTCG ACGGCGAGAC CGGCGCCTAC GAGGCGCGCG CGCTCGAGCA GCGCGGCGTG
ATGGCCGGTG CGGTTTCGGG CCTGGAGGGC GCGCGCAGCC GGCTGCTCGA GCAGCAGGCC
AAGGTCAAGG GCCTGAACGA CCGCCTCGCA TTGATGCAGA AGGAACTCGA GATCTCCGAG
CAGCTGCTCA ACGAAAAGCT GGTCGGCCAG GTCGAAGTGC TCGAGAAGCG GCGGCAGGTC
GAAAGCGTGC GAAGCGAGCT GGCCGTGGCA CGCCAGGGCG CCATCTCCGC GAGCGCTGCC
ATCACCGAGG CGCAGGCCAA GATGGCCGAG GCCGAAGGGC GCTTCCGGCG CCGCGCGTCC
GACGAACTGG CCACCGTGGA GCGCCAGTTC GCCAGCCTCA ATGAAGACCT GGCGCGCGCG
CGCACGCAGC GCTCCCGCAC CATGGTGAAG GCGCCCGCCG ACGGCATCGT CAAGGGGCTG
CGCAGCGCCA GCCCGGGCTG GGTCATCAAG CCCGGCGAAG CCATCATGGA AGTGGTGCCC
GACAAGGACG AGATCATGAT CGAGGCGCGC CTGAATCCCA ACGACCGCGG CTTCGTCGAG
GTCGGCCAGG CGGCGCGCGT CAAGATCACC GCCTACGACT ACCTGCGCTA TGGCGCGGTC
GAAGGCAAGG TCACCCTGGT GGCCGCCGAT GCCGACCGCG ACCCGGCCAT TGCCAACGCG
GCGCCGTACT ACCGCATCCT CGTGAGCACC GAGCAGGCCC ACGTGGGCCG CGAAGAGAAC
CGCATCACCG CCGGCATGGA GTCCGAGGTC GACCTGAAGG TGGGCACCGA TCCGTTCATC
TGGTACATCC TTCGGCCCGT GCTCAAGCTG CGGCGCGAAG CCTTCCGCGA ACCATGA
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| Protein sequence | MKSDLPQILQ DEDHKRAAQT SPKGRRRKWV IGGAVALLAA VGLGFPMETV VVAPGRVIPS
DRVKSIQHLE GGIVSSVLVK EGDKVTQGQP LVEIDLGGSG LNFEELTARY AATQATRIRL
MAESRGQPLR RESFAADIDE SVLDGETGAY EARALEQRGV MAGAVSGLEG ARSRLLEQQA
KVKGLNDRLA LMQKELEISE QLLNEKLVGQ VEVLEKRRQV ESVRSELAVA RQGAISASAA
ITEAQAKMAE AEGRFRRRAS DELATVERQF ASLNEDLARA RTQRSRTMVK APADGIVKGL
RSASPGWVIK PGEAIMEVVP DKDEIMIEAR LNPNDRGFVE VGQAARVKIT AYDYLRYGAV
EGKVTLVAAD ADRDPAIANA APYYRILVST EQAHVGREEN RITAGMESEV DLKVGTDPFI
WYILRPVLKL RREAFREP
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