| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4445 |
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| Symbol | |
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| ID | 7974119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4685562 |
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| End bp | 4686935 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644795034 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_002946322 |
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| Protein GI | 239817412 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCAACA CGCCAAGCGA GCCGTCGAGC AGCCCTCCAG GCGCGCCGTC GCTGCCGCGT
TTCTCGTTGA TCGCCTTGTG CGTGTTGGCC CTGGGGGCTT GGCCGATCGC CACCAACGCT
GCAGACGCCA CGCCGGTGCG CCCACAGCCT CAGCGACCGC TGATCCTCAA CGCCGGCACC
CAGCAGGAGC TGCTGATCGA AAAGGGCATC GAACGGATGG CCATCGCCGA CGAAGCGGTG
GCGGCAATTA CGGTCACGCG CAAGGGACCA AATTCACCGG CAGCGCGGCT GATCATCACC
GGCAAGGCAG CGGGCCGCAC CACGCTGATG ATCTGGGAAA AAGGCAACTC GGCGGCGACC
ACCTACTCCA TCGAGGTGCG GCGCCGAAGT GCCACCCTCG CCGGGACTAT GGATAGCGTG
GCCGCGCACC AGCAGGCGCG CGAGACAGCC ATGGCTGGCA TGCCCGAGAA AGCGGAACTC
ATCGATCGCT CTGTCGTCAA CGTGCGCAGC AATACCGTCC AGGTCGAAGT GAAGGTGGTG
GAGTTCAATC GAAGCGTGCT CAAGCAGGCA GGCTTGAACA TCTTCAGCAC GCGTGCGAAT
TCGAATGGGT TCAGCTTCGG CGTCTTTGGA CCGTCTTCGC TCGGAAGTAC CACTTTTGCC
TCCAACGGTT CCATCAGCGG CGAATACCAC AATCCACTGG CTCAAGCCTT CAGCCTCCTG
TTCAACTTTG GCAAGGCCGG GGTCGGCCTG AACGTCGGAT TTCTCGAAGG CAACGGGATG
GCCCGGGTGC TCGCCGAGCC CACCCTGGTC GCTATGTCAG GGCAGAGCGC CAGCTTCCTG
GCTGGCGGAG AATTGCCCGT GCCCGCGCCG CAGGGGTTGG GCACCACGAG CATCGAATAC
AAGCCTTTCG GCATCGGATT GACACTGACG CCCACCGTGC TGTCCAACGA CCGCATCGTG
CTCAAGGTGG CGCCTGAAGC CAGCGATCTT GACTACACCA ACTCGCTCAG CATCGGTGGC
GTTGCCGTGC CCGCGATCAC TACCCGCCGT GCCGACACCA CCGTGGAACT GGGCGACGGA
GAGAGCTTCA TCATCGGCGG GCTTGTCAGC CGGACCACGA CATCGAACGT CGACAAGGTA
CCCCTGCTCG GCGACCTTCC GATCCTGGGC ACCTTCTTCC GCCAGAACAA GTACCAGATG
AGCGAAAAGG AACTGGTAAT CCTCGTCACG CCTCATCTGG TCAAGCCCAT CGCGCGCGGC
ACGGACCTGA CGCCCTACCT TCCCGGTGGC GCCGAACAGC GCGACGGCGC CGTGTGGCGC
TCGCACTTCC TTGGTGGCGC AGCCAACACG GCAGTGCCGG GCTTCTCTCG TTGA
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| Protein sequence | MPNTPSEPSS SPPGAPSLPR FSLIALCVLA LGAWPIATNA ADATPVRPQP QRPLILNAGT
QQELLIEKGI ERMAIADEAV AAITVTRKGP NSPAARLIIT GKAAGRTTLM IWEKGNSAAT
TYSIEVRRRS ATLAGTMDSV AAHQQARETA MAGMPEKAEL IDRSVVNVRS NTVQVEVKVV
EFNRSVLKQA GLNIFSTRAN SNGFSFGVFG PSSLGSTTFA SNGSISGEYH NPLAQAFSLL
FNFGKAGVGL NVGFLEGNGM ARVLAEPTLV AMSGQSASFL AGGELPVPAP QGLGTTSIEY
KPFGIGLTLT PTVLSNDRIV LKVAPEASDL DYTNSLSIGG VAVPAITTRR ADTTVELGDG
ESFIIGGLVS RTTTSNVDKV PLLGDLPILG TFFRQNKYQM SEKELVILVT PHLVKPIARG
TDLTPYLPGG AEQRDGAVWR SHFLGGAANT AVPGFSR
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