| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4395 |
|---|
| Symbol | |
|---|
| ID | 7974069 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4638231 |
|---|
| End bp | 4638947 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644794984 |
|---|
| Product | ComF family protein |
|---|
| Protein accession | YP_002946272 |
|---|
| Protein GI | 239817362 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1040] Predicted amidophosphoribosyltransferases |
|---|
| TIGRFAM ID | [TIGR00201] comF family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.136408 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAGCC GTTGGGCCGA CCGGCCTTTG ACCTCTCTGC TCGCACGGCT GCCCAGCCAG
TGCGAGGTGT GCCGCGCCTG GCCCTCGCGC CGCATCTGCG ATGCCTGCGT GGCGCGCTTC
GCGCCGCCGG CCGCGCGCTG CGGCAGCTGT GCCCTGCCGG TGCCCGAGGG CGTGGCGCGG
TGCAGCGAAT GCATGCGCGA TCCGCCGCCG CTCGATGCCT GCTTCGCAGC CTGCGCCTAT
GCGTGGCCCT GGCCCGATTG CATCGCTCAA TTCAAGTTCC ACGGCGAGGC CGGCTGGGCC
GGGCCGCTCG CCACGCTGAT GCGCAGCGTG CCGTGGGTGG AGCCGGCGCT GGAGCAATGC
GACCGGGTGC TGCCGATGCC GATGGCGCCG GCCCGGCTGC GCGAGCGCGG CTTCAACCAG
GCGCTCGAAC TGGCGCGCCG GCTCGCGCCC GCCAAGACCG ACGCGGCGCT GCTGCTGCGT
ACCCGCGAGA CGCCGGCGCA GAGCGGCCTC GCGCGCGCCG AGCGCCTTGG CAACCTGCGC
GGCGCCTTCG CGGTGGAGCC CTTGCGCGCC CACGAGCTGC AAGGCCGGCG CGTGGTGCTG
GTCGACGACG TGATGACCAG CGGCGCCTCG CTGTTCTCGG CCGCCGCGGC GCTGCGGCTG
GCGGGCGCGG CGCATGTCAC GGCCCTGGTG TTCGCGCGCA CCGATCCGCC GCATTGA
|
|---|
| Protein sequence | MFSRWADRPL TSLLARLPSQ CEVCRAWPSR RICDACVARF APPAARCGSC ALPVPEGVAR
CSECMRDPPP LDACFAACAY AWPWPDCIAQ FKFHGEAGWA GPLATLMRSV PWVEPALEQC
DRVLPMPMAP ARLRERGFNQ ALELARRLAP AKTDAALLLR TRETPAQSGL ARAERLGNLR
GAFAVEPLRA HELQGRRVVL VDDVMTSGAS LFSAAAALRL AGAAHVTALV FARTDPPH
|
|---|
| |