| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4391 |
|---|
| Symbol | |
|---|
| ID | 7974065 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4633732 |
|---|
| End bp | 4635363 |
|---|
| Gene Length | 1632 bp |
|---|
| Protein Length | 543 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644794980 |
|---|
| Product | cytochrome c oxidase, subunit I |
|---|
| Protein accession | YP_002946268 |
|---|
| Protein GI | 239817358 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
|---|
| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCAG TCCTCGACCC CCACGGTCAC GCCCACGACG GCCACGCACA CGACGAGCAC
CACGCAGCGC CCACCGGCTG GCGCCGCTGG GTGTTCGCCA CCAACCACAA GGACATCGGC
ACGCTCTACC TGCTGTTCAG CTTCACCATG CTGATGGTGG GCGGCGTGCT TGCGCTCCTG
ATCCGCGCCG AGCTGTTCCA GCCCGGCCTG CAGCTGGTGA ACCCCGAGCT GTTCAACCAG
TTCACCACCA TGCACGGCCT GATCATGGTG TTCGGCGCCA TCATGCCGGC CTTCGTCGGC
TTCGCGAACT GGATGATCCC GCTGCAGATC GGCGCATCCG ACATGGCGTT CGCGCGCATG
AACAACTTCA GCTTCTGGCT GCTGATCCCC GCCGCGCTGA TGCTCGTGGG CTCGTTCTTC
ATGCCCGGCG GCGCGCCCGC CGCGGGCTGG ACGCTCTACG CGCCGCTCAC GCTGCAGATG
GGCCCCTCGA TGGACGCCGG CATCTTCGCG ATGCACATCA TGGGCGCCTC GTCGATCATG
GGCTCGATCA ACATCATCGT CACCATCCTG AACATGCGCG CCCCCGGCAT GACGCTCATG
AAGATGCCGA TGTTCTGCTG GACCTGGCTC ATCACCGCCT ACCTGCTGAT CGCCGTGATG
CCCGTGCTCG CAGGCGCCAT CACCATGACG CTGACCGACC GCCACTTCGG CACCAGCTTC
TTCAACCCCG CCGGCGGCGG CGACCCGGTG ATGTACCAGC ACATCTTCTG GTTCTTCGGC
CACCCCGAGG TCTACATCAT GATCTTGCCG GCCTTCGGCA TCATCAGCCA GATCGTGCCG
GCGTTCTCGC GCAAGCGGCT GTTCGGCTAC GCCTCGATGG TGTACGCCAC CTCGTCGATC
GCGATCCTGT CGTTCATCGT CTGGGCGCAC CACATGTTCA CGACCGGCAT GCCGGTCACG
GGCCAGCTGT TCTTCATGTA CGCGACCATG CTGATCGCGG TGCCCACGGC CGTGAAGATC
TTCAACTGGA TCGCCACCAT GTGGCAGGGC TCGATGACCT TCGAGACCCC GATGCTGTTC
GCGGTGGGCT TCATCTTCGT GTTCACGATG GGCGGCTTCA CCGGCCTCAT CCTGGCCATC
GCCCCGATCG ACATCCAGCT GCAGGACACC TACTACGTGG TGGCCCACTT CCACTACGTG
CTGGTGGCCG GCTCGCTCTA TGCCATGTTC GCGGGCTACT ACTACTGGGC GCCCAAGTGG
ACCGGCGTGA TGTACAACGA AACGCGCGGC AAGATCCACT TCTGGTGGTC GCTGATCTCG
TTCAACGTCA CCTTCTTCCC GATGCACTTC CTCGGCCTCG CGGGCATGCC GCGCCGCTAT
GCCGACTACC CGATGCAGTT TGCCGACTTC AACGCGGTGG CTTCGGTGGG TGCGTTCGCC
TTCGGTCTGG CCCAGGTGTA CTTCTTCTTC TTCATCGTGC TGCCGACCAT GCTCGGCAAG
GGCGAGAAGG CAGCGCAGAA GCCCTGGGAA GCGGCTGAAG GCCTCGAGTG GGAAGTGCCG
TCGCCGGCGC CCTTCCACAC CTTCGAGAAC CCGCCCAAGC TCGATGCGAC CGCCACCAAG
GTGATCGGCT GA
|
|---|
| Protein sequence | MSAVLDPHGH AHDGHAHDEH HAAPTGWRRW VFATNHKDIG TLYLLFSFTM LMVGGVLALL
IRAELFQPGL QLVNPELFNQ FTTMHGLIMV FGAIMPAFVG FANWMIPLQI GASDMAFARM
NNFSFWLLIP AALMLVGSFF MPGGAPAAGW TLYAPLTLQM GPSMDAGIFA MHIMGASSIM
GSINIIVTIL NMRAPGMTLM KMPMFCWTWL ITAYLLIAVM PVLAGAITMT LTDRHFGTSF
FNPAGGGDPV MYQHIFWFFG HPEVYIMILP AFGIISQIVP AFSRKRLFGY ASMVYATSSI
AILSFIVWAH HMFTTGMPVT GQLFFMYATM LIAVPTAVKI FNWIATMWQG SMTFETPMLF
AVGFIFVFTM GGFTGLILAI APIDIQLQDT YYVVAHFHYV LVAGSLYAMF AGYYYWAPKW
TGVMYNETRG KIHFWWSLIS FNVTFFPMHF LGLAGMPRRY ADYPMQFADF NAVASVGAFA
FGLAQVYFFF FIVLPTMLGK GEKAAQKPWE AAEGLEWEVP SPAPFHTFEN PPKLDATATK
VIG
|
|---|
| |