| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4379 |
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| Symbol | |
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| ID | 7974053 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4625356 |
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| End bp | 4626297 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794968 |
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| Product | RNA polymerase, sigma 32 subunit, RpoH |
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| Protein accession | YP_002946256 |
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| Protein GI | 239817346 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.202105 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACGC TGTCTGGAGC CTCTGCCAAC CAGCTCGCCG TCGCCAATCC ATGGTCGATG
GTGCCGCCGC TGGGCAACCT GGATGCTTAT ATTTCGGCCG CCAACCGCCT GCCGATGCTC
ACGCTCGAAG AAGAGCAGGG CTTCGCACGC CGTTTGCGCG ACCACAATGA CCTCGAAGCG
GCCGGTGCGC TGATCCTCTC GCACCTGCGC CTCGTGGTGT CCATTTCGCG CCAATACCTT
GGCTACGGGT TGCCTCACGG CGACCTGATC CAGGAAGGCA ACGTCGGCCT CATGAAGGCC
GTGAAGCGCT TCGACCCCGA CCAGGGCGTG CGGCTCGTGA GCTACGCCAT GCACTGGATC
AAGGCCGAGA TCCACGAGTA CATCCTGAAG AACTGGCGCA TGGTCAAGGT CGCCACGACC
AAGGCCCAGC GCAAGCTGTT CTTCAACCTG CGCTCGATGA AGCAGGGCTT CAAGGCCGAC
TCGGCCGCGG CCGACAACGG CACGCACCGC GACACGCTGA GCCCCGACGA GGTGTCGCAG
ATGGCGACCC GGCTCAACGT CAAGCCCGAA GAAGTGCTGG AAATGGAAAC CCGCCTGTCG
GGCGGCGACG TGCTGCTCGA TCCGGGTCCG TCGGACGACG GCGACGAGGC CTTCGGCCCG
ATTGCCTACC TGGCCGACGC CACGCAGGAG CCGACCGCCC TGCTCGAGTC GCAGCAGCGC
GACCGGCTTT CGAGCGACGG CATCGCCACC GCGCTCGAAG CGCTGGACGA CCGCAGCCGC
CGCATCGTCG AAGAGCGCTG GCTCAAGGTC AACGACGACG GTTCAGGCGG CATGACGCTG
CACGACCTGG CGGCGGTGTA CGGCGTGAGC GCCGAGCGCA TTCGCCAGAT CGAAGTCGCG
GCCATGAAGA AGATGAAGAA GGCGCTGGCC GACTACGCCT GA
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| Protein sequence | MTTLSGASAN QLAVANPWSM VPPLGNLDAY ISAANRLPML TLEEEQGFAR RLRDHNDLEA
AGALILSHLR LVVSISRQYL GYGLPHGDLI QEGNVGLMKA VKRFDPDQGV RLVSYAMHWI
KAEIHEYILK NWRMVKVATT KAQRKLFFNL RSMKQGFKAD SAAADNGTHR DTLSPDEVSQ
MATRLNVKPE EVLEMETRLS GGDVLLDPGP SDDGDEAFGP IAYLADATQE PTALLESQQR
DRLSSDGIAT ALEALDDRSR RIVEERWLKV NDDGSGGMTL HDLAAVYGVS AERIRQIEVA
AMKKMKKALA DYA
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