Gene Vapar_4357 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4357 
Symbol 
ID7970548 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp4604066 
End bp4604695 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content66% 
IMG OID644794946 
Productprotein of unknown function DUF161 
Protein accessionYP_002946234 
Protein GI239817324 
COG category[S] Function unknown 
COG ID[COG1284] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.247325 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATGCGC CACAACAACC CGCCACGCAG CCGGAACTGC TGCGCCACTC GCGTTTCGAC 
GACGCGCAGG CCATCTTTTC GGGCACCCTG TTCGTCGCCA TTGCCATGAT GCTGTTCGGC 
CAGGCGGGGC TGCTCACGGG CGGCACGGCC GGCGTCGCGT TTCTCCTGCA CTACGCCACG 
GGCGTGAGTT TCGGCAAGGT GTTCTTCCTG GTGAACCTGC CGTTCTACTG GTTCGCATGG 
CGCCACATGG GCGGGGCCTT CACGGTCAAG ACCTTTTCGG CGATCGCGCT GCTGTCGGTG 
ATGACGGACT GGGCGCCGCG CTACATCTCG ATCGATTCGC TGCACCCGGC CTTCGCAGCG 
GTGCTTGGCG GCCTGCTGCT GGGCACCGGA TGCCTGTTCC TCGCGCGGCA TCGTGCGAGC 
CTGGGCGGCG CGACGGTGCT GACGCTGTAC CTGCAGGAAA AGCGCGGCTG GCCCGCGGGC 
AAGGTGCAGA TCGGCATCGA TTGCACGGTG GTGCTGCTCG CGCTGTTCGT GATTCCGCCG 
CAGCGCGTGG GATGGTCGGT GCTGGCTGCG GTGGTGATGG GGCTTTTTCT ATGGATCAAC 
CACAGGCCGG GGCGCTACGC TGCGACTTGA
 
Protein sequence
MDAPQQPATQ PELLRHSRFD DAQAIFSGTL FVAIAMMLFG QAGLLTGGTA GVAFLLHYAT 
GVSFGKVFFL VNLPFYWFAW RHMGGAFTVK TFSAIALLSV MTDWAPRYIS IDSLHPAFAA 
VLGGLLLGTG CLFLARHRAS LGGATVLTLY LQEKRGWPAG KVQIGIDCTV VLLALFVIPP 
QRVGWSVLAA VVMGLFLWIN HRPGRYAAT