Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4342 |
Symbol | |
ID | 7970532 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4588535 |
End bp | 4590385 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644794930 |
Product | Tetratricopeptide domain protein |
Protein accession | YP_002946219 |
Protein GI | 239817309 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG3071] Uncharacterized enzyme of heme biosynthesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.118826 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTCCAT CGCTCCGCCG ACACCGCCTT GCGGCGGCCG CGTCCTTCGT CGTGTTGCTG GCTTGCGCCG CGCATGCGCA AAGCTCCGAT CCCGCCGCGC CCAGGAGCCC GGCACCCATC ATCGAACGGC CGGCACCCTC CCGCCCCGGC ACCAAGCCGG CGCCGGCCGC TGCCGCAGCC GCCGCGAAGC CGGCCGGCGA CCCCGAGGCC CAGCGCTCCG CACTGACGGC CGAGCTGTTC TACGAAATCC TGATGGGCGA GATGACCGCG CGCTCCGGCG ATCCCGGGTC GGGCTACGCG CTGGTGCTCG ATGCAGCCCG GCGGCTGCGC GATGGCAAGC TGTTCCAGCG CGCGGTCGAG ATCGCGCTGC AGTCGCGCTC CGGCGACGCG GCGCTCGCGG CCTCGCGCGC ATGGCAGGAA ACGCTGCCCA ACTCGCGTGA TGCACGGCGC ATCGAGCTGC AGATACTGAT CGCGCTCAAC CGCATCGGCG AAACGGTGGA GCCGCTGCGG GCCGAGATCG CGGCCACGCC GCAGATCGAG AAGCCGCTGC TGATGGCGGT GATCGCGCGC AACTACTCGC GCGCCTCAGA CAAGAAGCAG GCCGCCTCGG TGGTCGAGCA GGCGCTGGCC GACGAACTCA AGAGCCCGGC CACCGGTGCG CTGGCCTGGG CCACCATCGG CCGCATGCGC CTGAATGCCG GCGACACCTC GGGCGCACTG GACGCCGCGT TCAAGGGCCA GCAGATGGAC CCCGCCTCCG ATGCTCCGGC CGCACTTGCG CTCGAGATGA TCGACCCCGG CCAGCCGCTC GCGGAGCCGA TCGTCACGCG CTACCTGGCC AACAACCCGA AGGCGCCGCC CGACCTGCGC ATCGCCTACG CGCGCGTGCT GGTCGAGAAC CGCCGCTATG CGGATTCCAC CGCGCAGCTG CAGGCGCTCA CCGCGGCCCG GCCCGAACTG GCCGAGCCCT GGCTGCTGCT CGGCAGCCTG CAGGCGCAGG CCCGGCAGGA CGCGGCAGCC GAAACCTCGC TCAAGCGCTA CATCGACTTG GCGGCCAACC AGAAGGACCC GGACGACCGC CAGCGCGGCA CCACCCAGGC CTACCTCGTG CTCTCGCAGC TGGCGGAGCG CCGCAAGGAC TTCACGGCCG CGGAGCGCTG GCTCGCACGC GTCGACGGCA CCGACGAGCT CGTGGTCGCG CAGACGCGCC GCGCGGGCCT GCTGGCGCGC CAGGGCAAGC TGCCGCAGGC GCGCGAACTC GTGCGCGGCC TGCCCGAGCG TGCGCCCGAG GACAAGAAGC AGAAATTCCT CGCCGAAGTG CAGCTGCTGC GCGATGCCAA GCAGTACCAG GCGGCCTACG ACATGCTGGC GCAGGCTTCT GCCGCCGCCC CGAACGACAG CGACCTGGTC TACGACCAGG CCATGGTGGC CGAAAAGCTC AACCGCCTCG ACGAGATGGA GCGGCTGCTG CGCAGGCTGA TCGAGCTCAA GCCCGAGAAC CAGAACGCCT ACAACGCGCT CGGCTACTCC TTTGCCGATC GCAAGATCCG CCTCGACGAG GCCCGCACGC TGATCCAGAA GGCCGTGCAG CTGGCGCCGG AAGACCCCTT CATCGCGGAC AGCCTGGGCT GGGTGGAATT CCGGCTGGGC AACACGACCG AGGCCATCCG CATCCTCGAG ACGGCCTACA AGACCCGGCC CGATCCGGAG ATCGGCGCGC ATTTCGGCGA GGTGCTCTGG GCCACCGGCC AGAAGGACCG CGCGGTCACG ATCTGGAAGG AAGCCCTGCT GAGCGACGCC GAGAACGAGA CCCTGCAGGA AACGCTCAAG CGCCTGCGGG TCAAGCCGTG A
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Protein sequence | MIPSLRRHRL AAAASFVVLL ACAAHAQSSD PAAPRSPAPI IERPAPSRPG TKPAPAAAAA AAKPAGDPEA QRSALTAELF YEILMGEMTA RSGDPGSGYA LVLDAARRLR DGKLFQRAVE IALQSRSGDA ALAASRAWQE TLPNSRDARR IELQILIALN RIGETVEPLR AEIAATPQIE KPLLMAVIAR NYSRASDKKQ AASVVEQALA DELKSPATGA LAWATIGRMR LNAGDTSGAL DAAFKGQQMD PASDAPAALA LEMIDPGQPL AEPIVTRYLA NNPKAPPDLR IAYARVLVEN RRYADSTAQL QALTAARPEL AEPWLLLGSL QAQARQDAAA ETSLKRYIDL AANQKDPDDR QRGTTQAYLV LSQLAERRKD FTAAERWLAR VDGTDELVVA QTRRAGLLAR QGKLPQAREL VRGLPERAPE DKKQKFLAEV QLLRDAKQYQ AAYDMLAQAS AAAPNDSDLV YDQAMVAEKL NRLDEMERLL RRLIELKPEN QNAYNALGYS FADRKIRLDE ARTLIQKAVQ LAPEDPFIAD SLGWVEFRLG NTTEAIRILE TAYKTRPDPE IGAHFGEVLW ATGQKDRAVT IWKEALLSDA ENETLQETLK RLRVKP
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