Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4319 |
Symbol | |
ID | 7970506 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4562927 |
End bp | 4564378 |
Gene Length | 1452 bp |
Protein Length | 483 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644794905 |
Product | RND efflux system, outer membrane lipoprotein, NodT family |
Protein accession | YP_002946197 |
Protein GI | 239817287 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.239033 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTACCGAC TCCTGGCCGC CGCCACGGCG GCAAGCGCAC TGCTCGCCGG TTGTGTCCAC CCGCCCGTTG GGCCGGACTA TGTGACCCCC ACCTCCCTGT CTTCCGCGCA ATCCGCCTCC GCGGGCACAT TCCGATCTGC CGGTGGCGAT GCGGCGGACA CGACTCTGCC GCCGCACTGG TGGAGGCTTT ACAACGACCG GCAGTTGGAC GCGTTGGTCA CACAGGCGCT GGAACACAAC ACCGACCTGC GGCGGGCCGT GGCCAACCTG GAACGCTACC AAGCGCTAGA GGCCGAGGTG CACGGAAATG AGAAGCCGAC GGTGGCAGCC AGCGGTGGCC CCGGCTTCGG GCACGTCTCG GGCTTGAGCC TCCTGCAGCG CGACGACGAA CCGCCCAGCC GCGGCACATA CAGCGCGGGT GTTTCCTTGT CGTATCAACT GGACCTGTTC GGTCAAGTGC GTCGCGCCAT CGAAGCGGCC GAGGCCGACA CCGGCGCCGC GCAGGCGGCG TTGGACCTTG TACGTGTGAG CGTGGCCGGC AGCGTGGCAC ATGCCTATGC GCAAGCATGT TCAAGTGGCT ATCGCTTGCG TGCAGCGCAG GAGTCGGTTC GGCTGCAGGA AGAGGCGATC CGACTCTCCG AGCGGCTTCA ACAAGGGGGC AAGGTCGGGG AGATCGACAT TGCACGTGCG CAAGGTCAGT TGGAACAACT GCGTGCTGCG CTGCCGCCGC TTCGGGCCCA GCGCCAAGGT GCGTTGTACC GGTTAGCAAC ACTGACCGGC GCAGCACCTC GCGACTTCCC TGCGGCCGTG GCCACGTGCG AGCAGCCGCC GCGCTTGGCA GGACTGCTTC CGGTAGGAGA CGGCGCGGCT CTTTTGCGAC GGCGGCCCGA CGTTCGCCAA GCGGAACGCA GCTTGGCCGT CGCCACCGCC CGCATCGGCG TGGCAACAGC CGACCTTTAC CCAAAGGTGT CGCTGGGCCT CTCGGCCAGC TCGGCGGGCT TCTTGGCAAG ATTTGGAAAC CGGGAAACAC TCAGCTACAG CCTGGGCCCG CTGATCAACT GGACGCTACC CAACACCGGC GTTGCCCGCG CTCGCATCGC GCAGGCCGAG GCGGCCACCC GGGTTGCCGC TGCCCGCTTC GACGGGACCG TACTGACGGC ACTGCGCGAG GTCGAAACGG CGCTCGATGT CTACGCACGC GAGCTGGAAC GTCATGCTGC GCTCTCGGCC GCGCAAGAGC AAAGTGCCAT CGTCGCCCGG CAGGCGCGCA AGCTCTATGT CAACGGCAAG ACCGGTCAGC TTGAAGCATT GGATGCCGAG CGCACCCTGG CAGCCAGCGA AGCCGCTCTG GCAACGTCCG CTGCCCTGTT GGCAGAGGGT CAAGTCGCCG TATTCATGGC GCTGGGAGGT GGCTGGGAAG CCGATGGTCT CCTCGTGAAT GCCGTGCACT AG
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Protein sequence | MYRLLAAATA ASALLAGCVH PPVGPDYVTP TSLSSAQSAS AGTFRSAGGD AADTTLPPHW WRLYNDRQLD ALVTQALEHN TDLRRAVANL ERYQALEAEV HGNEKPTVAA SGGPGFGHVS GLSLLQRDDE PPSRGTYSAG VSLSYQLDLF GQVRRAIEAA EADTGAAQAA LDLVRVSVAG SVAHAYAQAC SSGYRLRAAQ ESVRLQEEAI RLSERLQQGG KVGEIDIARA QGQLEQLRAA LPPLRAQRQG ALYRLATLTG AAPRDFPAAV ATCEQPPRLA GLLPVGDGAA LLRRRPDVRQ AERSLAVATA RIGVATADLY PKVSLGLSAS SAGFLARFGN RETLSYSLGP LINWTLPNTG VARARIAQAE AATRVAAARF DGTVLTALRE VETALDVYAR ELERHAALSA AQEQSAIVAR QARKLYVNGK TGQLEALDAE RTLAASEAAL ATSAALLAEG QVAVFMALGG GWEADGLLVN AVH
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