| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4319 |
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| Symbol | |
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| ID | 7970506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4562927 |
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| End bp | 4564378 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644794905 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_002946197 |
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| Protein GI | 239817287 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.239033 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTACCGAC TCCTGGCCGC CGCCACGGCG GCAAGCGCAC TGCTCGCCGG TTGTGTCCAC
CCGCCCGTTG GGCCGGACTA TGTGACCCCC ACCTCCCTGT CTTCCGCGCA ATCCGCCTCC
GCGGGCACAT TCCGATCTGC CGGTGGCGAT GCGGCGGACA CGACTCTGCC GCCGCACTGG
TGGAGGCTTT ACAACGACCG GCAGTTGGAC GCGTTGGTCA CACAGGCGCT GGAACACAAC
ACCGACCTGC GGCGGGCCGT GGCCAACCTG GAACGCTACC AAGCGCTAGA GGCCGAGGTG
CACGGAAATG AGAAGCCGAC GGTGGCAGCC AGCGGTGGCC CCGGCTTCGG GCACGTCTCG
GGCTTGAGCC TCCTGCAGCG CGACGACGAA CCGCCCAGCC GCGGCACATA CAGCGCGGGT
GTTTCCTTGT CGTATCAACT GGACCTGTTC GGTCAAGTGC GTCGCGCCAT CGAAGCGGCC
GAGGCCGACA CCGGCGCCGC GCAGGCGGCG TTGGACCTTG TACGTGTGAG CGTGGCCGGC
AGCGTGGCAC ATGCCTATGC GCAAGCATGT TCAAGTGGCT ATCGCTTGCG TGCAGCGCAG
GAGTCGGTTC GGCTGCAGGA AGAGGCGATC CGACTCTCCG AGCGGCTTCA ACAAGGGGGC
AAGGTCGGGG AGATCGACAT TGCACGTGCG CAAGGTCAGT TGGAACAACT GCGTGCTGCG
CTGCCGCCGC TTCGGGCCCA GCGCCAAGGT GCGTTGTACC GGTTAGCAAC ACTGACCGGC
GCAGCACCTC GCGACTTCCC TGCGGCCGTG GCCACGTGCG AGCAGCCGCC GCGCTTGGCA
GGACTGCTTC CGGTAGGAGA CGGCGCGGCT CTTTTGCGAC GGCGGCCCGA CGTTCGCCAA
GCGGAACGCA GCTTGGCCGT CGCCACCGCC CGCATCGGCG TGGCAACAGC CGACCTTTAC
CCAAAGGTGT CGCTGGGCCT CTCGGCCAGC TCGGCGGGCT TCTTGGCAAG ATTTGGAAAC
CGGGAAACAC TCAGCTACAG CCTGGGCCCG CTGATCAACT GGACGCTACC CAACACCGGC
GTTGCCCGCG CTCGCATCGC GCAGGCCGAG GCGGCCACCC GGGTTGCCGC TGCCCGCTTC
GACGGGACCG TACTGACGGC ACTGCGCGAG GTCGAAACGG CGCTCGATGT CTACGCACGC
GAGCTGGAAC GTCATGCTGC GCTCTCGGCC GCGCAAGAGC AAAGTGCCAT CGTCGCCCGG
CAGGCGCGCA AGCTCTATGT CAACGGCAAG ACCGGTCAGC TTGAAGCATT GGATGCCGAG
CGCACCCTGG CAGCCAGCGA AGCCGCTCTG GCAACGTCCG CTGCCCTGTT GGCAGAGGGT
CAAGTCGCCG TATTCATGGC GCTGGGAGGT GGCTGGGAAG CCGATGGTCT CCTCGTGAAT
GCCGTGCACT AG
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| Protein sequence | MYRLLAAATA ASALLAGCVH PPVGPDYVTP TSLSSAQSAS AGTFRSAGGD AADTTLPPHW
WRLYNDRQLD ALVTQALEHN TDLRRAVANL ERYQALEAEV HGNEKPTVAA SGGPGFGHVS
GLSLLQRDDE PPSRGTYSAG VSLSYQLDLF GQVRRAIEAA EADTGAAQAA LDLVRVSVAG
SVAHAYAQAC SSGYRLRAAQ ESVRLQEEAI RLSERLQQGG KVGEIDIARA QGQLEQLRAA
LPPLRAQRQG ALYRLATLTG AAPRDFPAAV ATCEQPPRLA GLLPVGDGAA LLRRRPDVRQ
AERSLAVATA RIGVATADLY PKVSLGLSAS SAGFLARFGN RETLSYSLGP LINWTLPNTG
VARARIAQAE AATRVAAARF DGTVLTALRE VETALDVYAR ELERHAALSA AQEQSAIVAR
QARKLYVNGK TGQLEALDAE RTLAASEAAL ATSAALLAEG QVAVFMALGG GWEADGLLVN
AVH
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