Gene Vapar_4275 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4275 
Symbol 
ID7971359 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp4516908 
End bp4517615 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content69% 
IMG OID644794862 
Producttranscriptional regulator, GntR family 
Protein accessionYP_002946154 
Protein GI239817244 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.616941 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCACCA AAGCTTCAGT ACGCAAGACC AGTGCCGCCA ACTCCCGCGA GCACAGCGTC 
GACGAGATTG CCGAGAAGAT CTCGGCGGCG ATCCTCGAGC ACCGGCTCGC GCCGGGCACC 
AAGCTCGGCG AGGACCGGCT GGCCGCGATC TTCACCACCA GCCGCGCGAA GGTGCGCGAA 
GTGCTGGCCC GGCTGGCGCA CGAGCAGATC GTCGAGCTGG TTCCGCAGAA GGGGGCCTTC 
GTCGCCAAGC CGACCATCGA GCAGGCGCAG GACGTGTTCG AGGCGCGCCG GCTGATCGAG 
CCGGGCGTTC TGCGCCGGCT CGTCCGCACG CTCGACGACG TCAAGCGCCA GCGCCTGCGC 
CGCCACATCG ACCTGGAGGC CGAGGCGCGC AGCCGCGACG ACAAGCGCGC CATCGTGCGC 
CTCTCGGGCG AATTCCATGT GCTGCTGGCC GAGCTGGCAG GCAACTCCGC GCTGGCGCGC 
TCGATGCGCG AGCTGTCGGC GCTGACCTGC CTGATCATCT CGCTGTACGA CGCGCCCACC 
GCCACCAGCT GCCGCGCGGA CGAGCACGAG GAAATCGTCG CGGCAGTGAA TCGCGGCGAC 
GCCCAGCGCG CCGAGAAGCT GATGCTCCAT CACCTCGACC ACATCGAGCA GAGCCTGAAG 
CTGGACAGCA GCGCGGAAGA AGCCGATCTG GAGAGCGTGT TCAGCTGA
 
Protein sequence
MSTKASVRKT SAANSREHSV DEIAEKISAA ILEHRLAPGT KLGEDRLAAI FTTSRAKVRE 
VLARLAHEQI VELVPQKGAF VAKPTIEQAQ DVFEARRLIE PGVLRRLVRT LDDVKRQRLR 
RHIDLEAEAR SRDDKRAIVR LSGEFHVLLA ELAGNSALAR SMRELSALTC LIISLYDAPT 
ATSCRADEHE EIVAAVNRGD AQRAEKLMLH HLDHIEQSLK LDSSAEEADL ESVFS