Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4238 |
Symbol | |
ID | 7971322 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4480213 |
End bp | 4481283 |
Gene Length | 1071 bp |
Protein Length | 356 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644794825 |
Product | two component transcriptional regulator, LuxR family |
Protein accession | YP_002946117 |
Protein GI | 239817207 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAACCA CACCGCTTGC CAGAACGCTG CGCGAACAGG GCGCCAACAG CGACCTCGTG CTGATCGTCG ACGACGTGCC CGACAACCTC GCGGTGCTGC ACGATGCGCT CGACGAGTCG GGCTACACCG TGCTCATTGC CACCAGCGGC GAGCAGGCGC TGCAGCGCGC CGCGCAGGCC CGCCCCGACA TCGTGCTGCT CGACGCGATG ATGCCGGGCA TCGACGGCTT CGAGGTGGCG CGCCGGCTCA AGGCCGACGC CGCGACGGCG CACATTCCCA TCGTCTTCAT GACCGGCCTC ACCGAGACCG AGCACCTGGT GGCCGCGCTC GAGGCCGGCG GCGTCGACTA CGTCACCAAG CCGATCAAGC CCAAGGAAGT GCTGGCCCGC ATGAACGTAC ACCTGCAGGG CGCCCGCCGC GCGCGGCAGG ACGCGCGCCA GGCCGGCCAG GCGCGCAATG CGCTCGACGC CTTCGGCTAC GCGAGCATCA CGGTGCGCCT GCCCGAAGGC AAGCTGATCT GGCAGACGGC GCTCGCGCGC GAGCTGCTGC AGCGCTACTG CGACACCCGC GCGCCCGAGA CGCCGCCCGT GGTGCTCGAA TGGCTGCGGC GCCATGCGCC CGAGGCCAGG CAGCAGGGCA TCGAGCCGCC GGCGCTTTCG ATCGTGCGGC CGAGCGTGGG GGCCACGCCG AGCGCCGCCG GACAGCCCCA GGTGCCGAGC GTGGGGGCCA CGCCAACCAC GAGCAGCCTC AGCCTGCGGC TGCATCGGCA GACCGGGCAG GACGACGATG GCGACGAATG GATGATCGTC ATGCGCGAGA TTTCCGACAC TGCCGTGATC GAGGCCATGA GCCTGAGCCT GAAGCTCACG GCGCGCGAGG CCGAGGTGCT CTACTGGGTG GTCAAGGGCA AGACCAACAA GGACATCGGC GAGATCCTGG GCAGCAGCCC CGCCACGGCC AAGAAGCACC TGGAGCGGGT GTACGTGAAG CTCGGCGTCG AGACCCGCAC GGCCGCCGCG GGCGTGGCCA TCAAGCGCAT CCGCGAGCTG CAGCCGCAGT TCGAGATCTG A
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Protein sequence | METTPLARTL REQGANSDLV LIVDDVPDNL AVLHDALDES GYTVLIATSG EQALQRAAQA RPDIVLLDAM MPGIDGFEVA RRLKADAATA HIPIVFMTGL TETEHLVAAL EAGGVDYVTK PIKPKEVLAR MNVHLQGARR ARQDARQAGQ ARNALDAFGY ASITVRLPEG KLIWQTALAR ELLQRYCDTR APETPPVVLE WLRRHAPEAR QQGIEPPALS IVRPSVGATP SAAGQPQVPS VGATPTTSSL SLRLHRQTGQ DDDGDEWMIV MREISDTAVI EAMSLSLKLT AREAEVLYWV VKGKTNKDIG EILGSSPATA KKHLERVYVK LGVETRTAAA GVAIKRIREL QPQFEI
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