Gene Vapar_4238 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4238 
Symbol 
ID7971322 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4480213 
End bp4481283 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content70% 
IMG OID644794825 
Producttwo component transcriptional regulator, LuxR family 
Protein accessionYP_002946117 
Protein GI239817207 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAACCA CACCGCTTGC CAGAACGCTG CGCGAACAGG GCGCCAACAG CGACCTCGTG 
CTGATCGTCG ACGACGTGCC CGACAACCTC GCGGTGCTGC ACGATGCGCT CGACGAGTCG
GGCTACACCG TGCTCATTGC CACCAGCGGC GAGCAGGCGC TGCAGCGCGC CGCGCAGGCC
CGCCCCGACA TCGTGCTGCT CGACGCGATG ATGCCGGGCA TCGACGGCTT CGAGGTGGCG
CGCCGGCTCA AGGCCGACGC CGCGACGGCG CACATTCCCA TCGTCTTCAT GACCGGCCTC
ACCGAGACCG AGCACCTGGT GGCCGCGCTC GAGGCCGGCG GCGTCGACTA CGTCACCAAG
CCGATCAAGC CCAAGGAAGT GCTGGCCCGC ATGAACGTAC ACCTGCAGGG CGCCCGCCGC
GCGCGGCAGG ACGCGCGCCA GGCCGGCCAG GCGCGCAATG CGCTCGACGC CTTCGGCTAC
GCGAGCATCA CGGTGCGCCT GCCCGAAGGC AAGCTGATCT GGCAGACGGC GCTCGCGCGC
GAGCTGCTGC AGCGCTACTG CGACACCCGC GCGCCCGAGA CGCCGCCCGT GGTGCTCGAA
TGGCTGCGGC GCCATGCGCC CGAGGCCAGG CAGCAGGGCA TCGAGCCGCC GGCGCTTTCG
ATCGTGCGGC CGAGCGTGGG GGCCACGCCG AGCGCCGCCG GACAGCCCCA GGTGCCGAGC
GTGGGGGCCA CGCCAACCAC GAGCAGCCTC AGCCTGCGGC TGCATCGGCA GACCGGGCAG
GACGACGATG GCGACGAATG GATGATCGTC ATGCGCGAGA TTTCCGACAC TGCCGTGATC
GAGGCCATGA GCCTGAGCCT GAAGCTCACG GCGCGCGAGG CCGAGGTGCT CTACTGGGTG
GTCAAGGGCA AGACCAACAA GGACATCGGC GAGATCCTGG GCAGCAGCCC CGCCACGGCC
AAGAAGCACC TGGAGCGGGT GTACGTGAAG CTCGGCGTCG AGACCCGCAC GGCCGCCGCG
GGCGTGGCCA TCAAGCGCAT CCGCGAGCTG CAGCCGCAGT TCGAGATCTG A
 
Protein sequence
METTPLARTL REQGANSDLV LIVDDVPDNL AVLHDALDES GYTVLIATSG EQALQRAAQA 
RPDIVLLDAM MPGIDGFEVA RRLKADAATA HIPIVFMTGL TETEHLVAAL EAGGVDYVTK
PIKPKEVLAR MNVHLQGARR ARQDARQAGQ ARNALDAFGY ASITVRLPEG KLIWQTALAR
ELLQRYCDTR APETPPVVLE WLRRHAPEAR QQGIEPPALS IVRPSVGATP SAAGQPQVPS
VGATPTTSSL SLRLHRQTGQ DDDGDEWMIV MREISDTAVI EAMSLSLKLT AREAEVLYWV
VKGKTNKDIG EILGSSPATA KKHLERVYVK LGVETRTAAA GVAIKRIREL QPQFEI