Gene Vapar_4181 details

Gene Information

• Locus tag: Vapar_4181
• Symbol: flgL
• ID: 7971918
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 4420790
• End bp: 4422001
• Gene Length: 1212 bp
• Protein Length: 403 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644794767
• Product: flagellar hook-associated protein FlgL
• Protein accession: YP_002946060
• Protein GI: 239817150
• COG category: [N] Cell motility
• COG ID: [COG1344] Flagellin and related hook-associated proteins
• TIGRFAM ID: [TIGR02550] flagellar hook-associated protein 3

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCATCA GCACCCAATC CTTCTACGCC CAGAGCATGA GCTCGCTCGG TTCGCAGCAG 
CAGCAGCTGT TCCGCATCCA GCAGCAGCTC GCTGCGGGCA CCAAGTTCCT GACGGCTGCC 
GACGATCCGG TGGCCGCCGC GCGCGCGCTG GGCGTGAGCC AGTCGATGGC GGAGTCGGCG 
CAGTACGCCA CCAGCCGCAG CCGCGCGATG CTCTCGCTCT CGCAGGAAGA GACCGCGCTG 
AAGTCGGCCA CCTCGATCAT GCAGAACATG AAGACGCTCG CGGTGCAGGC GGGCAACGGC 
ACGCTGTCGG ATGCGGACCG CGCCTCGCTG GCCACCACGC TGCAGGGCAA CCTGGACCAG 
CTCGTGAACG TGGCCAACGC GGACGACGGC AACGGCCAGT TCCTGTTCGC CGGCTTCAAG 
AGCGGGAGCC AGCCCTTCGT GGCCGGCGCC GCCGGCGGCA TCCAGTACAT GGGCGACCAG 
GGCCAGCGGC TGATGCAGGT CGACGTGTCG CGCCAGATGT CCACCACGGA CGACGGGCGC 
AGCGTGTTCC AGTCGGTGCA GGGCGGCGCG GGCTACGTGA GCTCGGCGGG CGCGGCCAAC 
ACCGGCTCCG GCGTCTTCGG CGCCGTGGGC GTGACCGACG CGGGCGCGGC CAACTACGGC 
AAGGACTTCG TCATCAGCTT CAGCGGCGGC AACTACACGG TGGCTACGCA GGAGACGCCG 
CCCGTGGTCG CCGCATCGGG CGCCTACGTG CCGGGCGCCG CCATCTCGTT CGGCGGCCTG 
CAGATCACCA TGAGCGGCGC GCCGGCCGAT GGCGACACCT TCCAGGTGGC CACCGCGCGC 
AATGCGGGCA CCGACGTGTT CGCCGCCATC GGCGAACTGG TCACCGCGCT CAGGCAGCCG 
CTCGCCGGCA ATGGCGATTC GGCGAAGGCC GACCTGCTCA ACGCGCTCAG CACCTTCAAC 
GTCAAGATCA CCCATGCGCA CGACAACGTG CTCACCGTGA TGTCGTCGAT CGGCTCGCGC 
ATGAACGAGA TCGACGCGCT CGACACCAGC GGTGCCTCGC GCGGCCTGAC CGACAAGGCC 
TACCTCTCGG AGCTGGTGGA CCTGGACCCG GCCAGCGCCA TCTCGGAATT CCTGCAGCGC 
CAGACCTCGC TCCAGGCCAC CCAGCAGACC TTCGCGCGGC TGCACAGCAT CGCGCTGTTC 
AACTACCTGT GA 

 

Protein sequence

MRISTQSFYA QSMSSLGSQQ QQLFRIQQQL AAGTKFLTAA DDPVAAARAL GVSQSMAESA 
QYATSRSRAM LSLSQEETAL KSATSIMQNM KTLAVQAGNG TLSDADRASL ATTLQGNLDQ 
LVNVANADDG NGQFLFAGFK SGSQPFVAGA AGGIQYMGDQ GQRLMQVDVS RQMSTTDDGR 
SVFQSVQGGA GYVSSAGAAN TGSGVFGAVG VTDAGAANYG KDFVISFSGG NYTVATQETP 
PVVAASGAYV PGAAISFGGL QITMSGAPAD GDTFQVATAR NAGTDVFAAI GELVTALRQP 
LAGNGDSAKA DLLNALSTFN VKITHAHDNV LTVMSSIGSR MNEIDALDTS GASRGLTDKA 
YLSELVDLDP ASAISEFLQR QTSLQATQQT FARLHSIALF NYL