Gene Vapar_4176 details

Gene Information

• Locus tag: Vapar_4176
• ID: 7971913
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 4417974
• End bp: 4418441
• Gene Length: 468 bp
• Protein Length: 155 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 644794762
• Product: flagellar motor switch protein FliN
• Protein accession: YP_002946055
• Protein GI: 239817145
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1886] Flagellar motor switch/type III secretory pathway protein
• TIGRFAM ID: [TIGR02480] flagellar motor switch protein FliN

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTGACA ACACCCCATC CACCAGCGAT GCGGACGACT GGGCCAGCGC GCTGGCCGAG 
CAGACCGCGG CCTCCGCGCC CGCGCCCGCC TTCGCCCCCG CCGCCCCGCC GGCGATCGCT 
CCCGCTCCCG CACCGGCTGC CGCTCCAGCG GGCAGCCGCG TGTTCCAGCC GCTGCAGGCC 
ATGGCGACCG GCGCCGGCTC GCCGGTGGAC GTGGAGCGCA TCCTCGACGT GCCGGTGCAG 
CTCACGGCCG AGCTCGGCCG CACGCGCATC ACCATCAAGA GCCTGCTGCA GCTCTCGCAG 
GGCTCGGTGG TCGAGCTCGA CGGCCTGGCC GGCCAGCCGC TGGACGTGCT GATCAACGGC 
TACCTGATCG CGCAGGGCGA AGTGGTGGTG GTCAACGAGA AGTACGGCAT CCGCCTGACC 
GACATCGTCA CGCCCTCCGA GCGCATGCAG AAGCTCGGCC GGTCATGA 

 

Protein sequence

MTDNTPSTSD ADDWASALAE QTAASAPAPA FAPAAPPAIA PAPAPAAAPA GSRVFQPLQA 
MATGAGSPVD VERILDVPVQ LTAELGRTRI TIKSLLQLSQ GSVVELDGLA GQPLDVLING 
YLIAQGEVVV VNEKYGIRLT DIVTPSERMQ KLGRS