| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4127 |
|---|
| Symbol | |
|---|
| ID | 7971864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4366119 |
|---|
| End bp | 4366691 |
|---|
| Gene Length | 573 bp |
|---|
| Protein Length | 190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644794713 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002946006 |
|---|
| Protein GI | 239817096 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3165] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0349237 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACAC CATCGTCCCC ATTTTCTTTT CTCGACGACC TGTTCAACCG CATCGGCGAG
CGCCTGCAGC CGCCCGCCTG GGCGGTGCAC GAGATCCAGC ACCGCGCGGT GCTGTTCCTG
AACCATGTGC TGCAGCAGGA ACCCGAGGCC CAGCAGCGGC TGCTCCGGCA GCAGGGGCGG
GTGGTGCGCT TCCAGTGGCG CTTCGTGACG ATGGATCTGG TCGCCACGCC GGCCGGCCTG
CTGGACCTCG CGCCTGCCGG CTCGGTGCCT GAGCTCACGC TCACCGTCAC GGATGAATCT
CCCTTCGAGC TGGCCCGCGC CACGCTGCGC GGCGGCAAGC CCTCGGTGCA GATCATCGGC
GACGTGCAGC TCGCCGCCGA GGTCAACTGG CTGGTCGACC ACGTGCGCTG GGACGTCGAG
GACGACCTCG CCCGCCTCGT GGGCGACGTG CCGGCGCACA CCATCGCCAA CGGCGCGCGC
CGGGTCGTGG AAGCGCTGCG CCAGTTCGCA GGCGGTCGCA AGCCCCCGCA GGCCGGCGGT
CCGTCGACCG GCTCGGCGAG CACGGCCGAA TGA
|
|---|
| Protein sequence | MATPSSPFSF LDDLFNRIGE RLQPPAWAVH EIQHRAVLFL NHVLQQEPEA QQRLLRQQGR
VVRFQWRFVT MDLVATPAGL LDLAPAGSVP ELTLTVTDES PFELARATLR GGKPSVQIIG
DVQLAAEVNW LVDHVRWDVE DDLARLVGDV PAHTIANGAR RVVEALRQFA GGRKPPQAGG
PSTGSASTAE
|
|---|
| |