| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4126 |
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| Symbol | ubiB |
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| ID | 7974448 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4364557 |
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| End bp | 4366122 |
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| Gene Length | 1566 bp |
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| Protein Length | 521 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794712 |
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| Product | putative ubiquinone biosynthesis protein UbiB |
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| Protein accession | YP_002946005 |
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| Protein GI | 239817095 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0661] Predicted unusual protein kinase |
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| TIGRFAM ID | [TIGR01982] 2-polyprenylphenol 6-hydroxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0185917 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGCGCT TCTACCGCGG AATCTTCATC GTCTGGGTCG CACTGCGCTA CGGCCTGGAC
GAGCTGGTGC TCACGAGCTT CCAGAAACCC TGGCTGCGCG TGGTGGCGCG CATCGTCTCC
ATCGGCCGCA ATCTCGACGC GCCCCGCGGC CAGCGCCTGC GCGAGGCGCT CGAACGCCTG
GGACCGATCT TCGTCAAGTT CGGCCAGGTG CTGTCGACCC GGCGCGACCT GCTGCCGCCC
GACATTGCCG ACGAGCTTGC CTTCCTGCAG GACCGTGTGC CGCCATTCCC CTCGGCAGTC
GCCATCGCCA CCATCGAGCG CGCCTTCCGT CGCCCGGTGG GCGACGTGTT CGTGCAGTTC
GACGAGACGC CGATCGCCAG CGCGTCGATC GCCCAGGTCC ACTTCGCGAC CATCCGCACC
GACGAAGGCG AGGTGCGCGA GGTCGCGGTC AAGGTGCTGC GCCCCAGCAT GCGCGGCGTG
ATCGAGAAAG ACCTGGCGCT CATGGCCATG ATGGCCGGCT GGGTCGAGAA GCTCTCGCCC
GACGGCAAGC GCCTGAAGCC GCGCGAGGTG GTCGGCGAGT TCGACAAGTA CCTGCACGAC
GAGCTCGACC TGGTGCGCGA GGCGGCCAAC GCGGCCCAGC TGCGCCGCAA CATGGCCTCG
CTCGAGCTGG TGCTGATCCC CGAGATGTTC TGGGACTTCT GCCACCCCGA GGTGATCGTG
ATGGAGCGCA TGAACGGCGT GCCCATTGCC CAGCTCGACC GCCTGCGCGC GGCCGGCGTC
GACATTCCCA AGCTGGCGCG CGACGGCGTC ACGATCTTCT TCACCCAGGT GTTCCGCGAC
GGCTTCTTCC ACGCCGACAT GCACCCGGGC AACATCCAGG TGAGCCTCGC GCCGGAGACC
TTCGGGCGCT ACATCTCGCT GGACTTCGGC ATCATCGGCA CGCTGACCGA GTCGGACAAG
GAATACCTCG CGCAGAACTT CGTGGCCTTC TTCCGGCGCG ACTACAAGCG CGTGGCCGAG
CTGCACCTGG AGAGCGGCTG GGTGCCCGAG GGCACGCGCA TCGACGAGCT CGAAGGCGCG
ATCCGCACCG TCTGCGAGCC GTACTTCGAC CGGCCGCTGA AGGAAATCTC GCTGGGCATG
GTGCTGATGC GCCTGTTCCA GACCTCGCGC CGCTTCCATG TCGAGATCCA GCCGCAGCTG
GTGCTGCTGC AGAAGACCCT GCTCAACATC GAGGGCCTGG GCCGCCAGCT CGATCCGGAG
CTCGATCTCT GGCACACCGC CAAGCCCTTC CTCGAGAAGT GGATGGTCGA CCAGATCGGG
CCGAAGAAGC TGTTCCAGCA GCTCAAGGCC GAAGCGCCGC GCTACGCAAA ACTCTTGCCC
GAGCTGCCGC GCCTGCTGCA CGATTTCCTG GAAAATCGGC CCGCCGACCA CCGCCGCGAG
CTGCTGGAAC TGCTGGCCGC CCAGAAGCGC ACCAACCGGC TGCTGCAGAC CATCATCTAC
GGTGGCATAG GATTTGTATT GGGGTTGCTC GCCATGCAAT TGCTGGTGCG CGTGAGATTG
TTCTAG
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| Protein sequence | MRRFYRGIFI VWVALRYGLD ELVLTSFQKP WLRVVARIVS IGRNLDAPRG QRLREALERL
GPIFVKFGQV LSTRRDLLPP DIADELAFLQ DRVPPFPSAV AIATIERAFR RPVGDVFVQF
DETPIASASI AQVHFATIRT DEGEVREVAV KVLRPSMRGV IEKDLALMAM MAGWVEKLSP
DGKRLKPREV VGEFDKYLHD ELDLVREAAN AAQLRRNMAS LELVLIPEMF WDFCHPEVIV
MERMNGVPIA QLDRLRAAGV DIPKLARDGV TIFFTQVFRD GFFHADMHPG NIQVSLAPET
FGRYISLDFG IIGTLTESDK EYLAQNFVAF FRRDYKRVAE LHLESGWVPE GTRIDELEGA
IRTVCEPYFD RPLKEISLGM VLMRLFQTSR RFHVEIQPQL VLLQKTLLNI EGLGRQLDPE
LDLWHTAKPF LEKWMVDQIG PKKLFQQLKA EAPRYAKLLP ELPRLLHDFL ENRPADHRRE
LLELLAAQKR TNRLLQTIIY GGIGFVLGLL AMQLLVRVRL F
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