| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4088 |
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| Symbol | |
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| ID | 7974410 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4332796 |
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| End bp | 4334472 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794674 |
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| Product | sulphate transporter |
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| Protein accession | YP_002945967 |
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| Protein GI | 239817057 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0659] Sulfate permease and related transporters (MFS superfamily) |
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| TIGRFAM ID | [TIGR00377] anti-anti-sigma factor
[TIGR00815] high affinity sulphate transporter 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.242606 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGTCAC CGCTGAACAT CACCCGCTTC CGCCCGCGCC TGCTGGACGC CATGGCGAGC
TACAGCCGGG AGCGCTTCTT CAAGGACCTG GGGGCCGGCG CCACGGTGGG CATCGTGGCG
CTGCCGCTGG CCATGGCCTT TGCCATCGCC TCCGGGCTCA ATCCCGAGGC CGGCATCTGG
ACGGCGATCA TCGCGGGCTT CCTGATCTCG CTGCTGGGCG GCTCGGCGGT GCAGATCGGC
GGGCCGGCCG GCGCGTTCAT CGTGATCGTC TACGGCATCG TCGAACGCTA TGGCGTGGCC
AACCTGCTGA TTTCCACCGC CTGTGCCGGC GTGCTGCTGT TCACTGCGGG GCTGTTCGGG
CTCGGGCGGC TGGTGCGCTT CGTGCCGCTG TCGATCGTGG TCGGGTTCAC CAACGGCATC
GCCGTGCTCA TCCTGCTGTC GCAGCTCAAG GACCTGCTCG GGCTCACGGT CGCCAAGATG
CCGGCGGACG TGTTCTCGCA GCTGCATGCC ATGGCGCTGC AGATCGGCAC CTTCAATCCC
TATGCCTTCG CACTCGGGCT GGCCTGCCTG GCCGGACTCG CGATCTGGCC GCTGCTGCTG
CAGGGCGAAT CGAAGGTGGG CCATGCGGTG CAGCGCCTGG CGGGGCGCAT GGCGCGCACG
CGCGCGGTGC AGGTGGGCTC GCGCATGCCG GGACCGATCG TCGCGCTGGT CACGCTCACG
CTGGTGTCGT GGGGCTTCAG CCTGCCGGTG GAGACCATCG GCACGCGCTT CGGCGGCATT
CCCGAAGGCC TGCCGGCCTT TGCGCTGCCC GACTTCTCAT GGGAAACGGT CAAGCAGCTG
GTCACGCCAA CGCTGACCAT CGCGATCCTG GGCGCCATCG AGTCGCTGCT GTGCGCGCGC
GTGTCCGACC AGCTCAGCGG CCAGCCGCGC CACGATCCGA ACCAGGAGCT GATGGCCCAG
GGCATCGCCA ACGTGGTGGC ACCCTTCTTC GGCGGCATGC CGGCCACCGG CACCATCGCG
CGCACCGTGA CCAACATCCG CTCGGGCGCC AGCTCGCCGA TCGCCGGCAT CGTGCATGCG
GTCACGCTGA TGGTGGTGGT GCTGCTGGCC GCGCCGCTCG CGCGCCACGT GCCGCTCGCG
GTGCTGGCGG GCATCCTGGT CTTCGTGGGC CTGAACATGG GCGAATGGCG CGAGTTCACG
CCGGGGCAGC TGCGCCACTT CAGCCGCCAT TACCGGCTGC TGATGCTCGG CACCTTCTTT
CTCACGGTGG TGTTCGACCT GACGGTGGCG GTGCAGGCGG GCCTTGTGCT GGCCTGCGCG
CTCTTCATCC GGCGCATGAG CGAGCTGTTC AGCGTCGAGC TGGTCACGAT GCAGCCGCCG
GTGCTCACCT ACCGGCTCTA CGGCGCGCTG TTCTTCGGGG CGGCGGCCAA GCTGGACGAG
GCCGTCAACG CGGCCGAAAG CGCGCCGCGC GGCATGACGG TGGTGCTCGA CGCCACGCAC
CTCATCTACC TGGACGCCAC GGGCGTCGAC GCGCTGCGGC AATTGCACCG CGCGGTGCTG
GCGCGCGGCG GGCTGCTGCG GGTGGAATCG CTGCAGCCGC AGCCGCTCGA GGTGATCGTG
CGCTCGGGTT TTGCCGACGA ACTGACGAGC GGCCAGCCGC ACGGCACCGA AGGCTAG
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| Protein sequence | MQSPLNITRF RPRLLDAMAS YSRERFFKDL GAGATVGIVA LPLAMAFAIA SGLNPEAGIW
TAIIAGFLIS LLGGSAVQIG GPAGAFIVIV YGIVERYGVA NLLISTACAG VLLFTAGLFG
LGRLVRFVPL SIVVGFTNGI AVLILLSQLK DLLGLTVAKM PADVFSQLHA MALQIGTFNP
YAFALGLACL AGLAIWPLLL QGESKVGHAV QRLAGRMART RAVQVGSRMP GPIVALVTLT
LVSWGFSLPV ETIGTRFGGI PEGLPAFALP DFSWETVKQL VTPTLTIAIL GAIESLLCAR
VSDQLSGQPR HDPNQELMAQ GIANVVAPFF GGMPATGTIA RTVTNIRSGA SSPIAGIVHA
VTLMVVVLLA APLARHVPLA VLAGILVFVG LNMGEWREFT PGQLRHFSRH YRLLMLGTFF
LTVVFDLTVA VQAGLVLACA LFIRRMSELF SVELVTMQPP VLTYRLYGAL FFGAAAKLDE
AVNAAESAPR GMTVVLDATH LIYLDATGVD ALRQLHRAVL ARGGLLRVES LQPQPLEVIV
RSGFADELTS GQPHGTEG
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