| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4022 |
|---|
| Symbol | |
|---|
| ID | 7974587 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4266233 |
|---|
| End bp | 4267210 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644794608 |
|---|
| Product | protein of unknown function DUF6 transmembrane |
|---|
| Protein accession | YP_002945902 |
|---|
| Protein GI | 239816992 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCCAGA GCCCCGGGTC CGGCAGCGAC AGCGCGGCAA CGGCGGCACT GGCGAACGCC
CGCGCCGCGG CACGCCAGAC GCGCGACCTC GAATCCGAAC GCATCCTCGC GGGCATCGGC
ATGGTGCTGG TGGCAGTGGC CTGCTTTGCC ACGCTCGACA CCGCCACCAA GACCTCCACC
GCCGCCGTGC CCATTCTGAT GGGCGTGTGG TTCCGCTATG CCTTCCAGGC CGTGGCCACC
ACCGCGGTGC TGCTGCCGCG GCACGGCACG GCCCTGCTGC GCACGCAGCA TCCGCGCTAC
CAGCTGCTGC GCGGCGCGCT GCTGCTGGTG TCGAGCACGC TGGCCTTCCT GAGCCTGCGC
TACATGCCGC TGGCCGAGTT CACGTCCATC GTGCTCATTG CGCCGCTCGT CATCACGCTG
CTTGCGGCCA CCACGCTCAA GGAGCAGGTC TCTGCGCTGC GCTGGGTGCT GGTGGCCGGC
GGCTTCGCCG GCACGCTGGT CATCCTGCGC CCGGGCGGCG ATGCGTTCAG CTGGGCCGTG
CTGCTGCCCA TTGGGCTGGT GCTGACCAAT GCCTGGTTCC AGGTGCTCAC GAGCAAGCTG
GCGCAGACCG AGAATCCGCT CACGATGCAT TTCTATACCG GCTGGGTGGG TGCGCTGATC
GCCTCGCTGG CGCTGCCCTT CGTGTGGACC GCCCTGCCCT CGTGGCACTG GTGGGCCTTG
CTGTGCCTCA TGGGGTTCAT GGGCACGGTG GGACACTTCA TCCTCATCCT GGCCTACCAG
CGCGCACCGG CATCCACGCT CACGCCCTAC CTCTATGCGC AGATCGCGTT TGCCATGCTC
GGTGGCTGGC TGGTCTTTTC CCACGTGCCC GACCGCTTCT CGCTCATCGG CATGTCGATG
ATCGCGGTGT GCGGCGCGGC CGGCGCCTGG CTCACGGTGC GCGAGCGCCG CGTGCCGATC
GAGCCGGCCG AATCCTGA
|
|---|
| Protein sequence | MSQSPGSGSD SAATAALANA RAAARQTRDL ESERILAGIG MVLVAVACFA TLDTATKTST
AAVPILMGVW FRYAFQAVAT TAVLLPRHGT ALLRTQHPRY QLLRGALLLV SSTLAFLSLR
YMPLAEFTSI VLIAPLVITL LAATTLKEQV SALRWVLVAG GFAGTLVILR PGGDAFSWAV
LLPIGLVLTN AWFQVLTSKL AQTENPLTMH FYTGWVGALI ASLALPFVWT ALPSWHWWAL
LCLMGFMGTV GHFILILAYQ RAPASTLTPY LYAQIAFAML GGWLVFSHVP DRFSLIGMSM
IAVCGAAGAW LTVRERRVPI EPAES
|
|---|
| |