| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4015 |
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| Symbol | |
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| ID | 7974580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4259082 |
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| End bp | 4260560 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644794601 |
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| Product | major facilitator superfamily MFS_1 |
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| Protein accession | YP_002945895 |
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| Protein GI | 239816985 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCAGT CCAATCCCGC TGTTCCCGCC GCATCGCTTC CTTCCCCGGG CATCCACGGC
ACGGGCGCGA CGAAGCCCGG CCCGCTGGCC CTGTGGGTCA TGCTCAGCGG CACCTTCCTG
GTGGTGCTGG ACTTCTTCAT CGTCAACGTC GCGCTGCCCT CGATGCAGCG CGAGCTGCTG
GCGAGCACCG CCACGCTGCA ACTGGTGGTG GCGGGCTACG GCCTGGCCAC TGCCGCGGGC
CTCATCACCG GCGGCCGCCT GGGCGACCTT TTGGGCCGCC GCCGCATGTT CATGCTCGGC
CTCCTGCTGT TCACGCTGGC CTCGGCCGCC TGCGGCTTTG CGCCGAATGC CGAATTGCTG
GTGGCGGCGC GCGTGCTGCA GGGGCTGGCC GGTGCGCTGC TGCAGCCGCA GGTGCTCGCG
ATGATCGGCC TGGCCTACAC CGGCGAAGAC CGCGCGCGCG CCTTTGCGGC CTACGGGCTC
ACGCTGGGGC TTGGCGCCAC GCTGGGGCAG CTGGTGGGCG GCTTGCTGAT CCATGCGGAC
CTGGCGGGGC TGGGCTGGCG CAGCTGCTTT CTCATCAACG TGCCGATCGG GCTGCTGGCG
CTGGCGTTGG CACCGCGCCT CATTCCGCCG CTTGCGAACA GTGGCAGCAA CAGCAAGCTC
GACCTTGCCG GCATGCTGTT GGTGGCCGCG GGTTCGGTCG CCGTGGTGCT GCCGCTGGTG
GAAGGCCGCC AGCAGGGCTG GCCGCTGTGG AGCTGGCTGT GCCTTGCCGC CGCGCTGCCG
CTGCTCGCTG CGTTCGCTTT CCAGCAGCGC CGGCTGGCCG CGAACGGCGG TGCGCCACTG
GTGGCGCCCG TGCTGCTGGC GAACCGGCGC TTCGTCATGG GACTTTTCAC CACGCTGGCC
TTCTATGTCG GCAATGCCTC GCTCTACTTC GTGCTGGCGC TCTACCTGCA GCAAGGCCTG
GCGCTCGGCC CGCTGAGCTC GGGCATCGTC TTCACCTCAT TGGCGGTCGG CTTCTTCGCA
ACCTCGATGG CCGGCGCGCG CCTGGCACGC CGCTTCGGCG GCAAGCCTCC GATCGCGCTC
GGCGCCCTGG TGCTGGCCGC GGGCCATGCA TTGCAGTTCG TCAACGTGGC GGGGTGGGCC
GGACACACGC ACGTGGCCGC GTGGATGGTG CCGCTGCTGC TGGTGCAGGG CGCGGGGCTC
GGCATGGTGA TGGCGCCGCT GGTGTCCACC GTGCTGGCCG GCCTGCCGCC GCAGCATGCG
GGCGTGGCGT CGGGCGTGCT GTCGATGGTG CAGCAGGCGA GCAATGCGCT GGGCGTGGCG
CTGATCGGAA TCCTGTTCTA TGGGCGGCTG GGCGATACAC CGGATGCGGC GGCCTATGCG
AGCGCGTTCG GTGTGGCGCT GGTGTACCTG ATGGTGTCCG CGCTGGTGGT GGCCCTGCTG
CATCGGCGCG CGAACCGGAA GCCATCCGCG CAAGTGTGA
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| Protein sequence | MTQSNPAVPA ASLPSPGIHG TGATKPGPLA LWVMLSGTFL VVLDFFIVNV ALPSMQRELL
ASTATLQLVV AGYGLATAAG LITGGRLGDL LGRRRMFMLG LLLFTLASAA CGFAPNAELL
VAARVLQGLA GALLQPQVLA MIGLAYTGED RARAFAAYGL TLGLGATLGQ LVGGLLIHAD
LAGLGWRSCF LINVPIGLLA LALAPRLIPP LANSGSNSKL DLAGMLLVAA GSVAVVLPLV
EGRQQGWPLW SWLCLAAALP LLAAFAFQQR RLAANGGAPL VAPVLLANRR FVMGLFTTLA
FYVGNASLYF VLALYLQQGL ALGPLSSGIV FTSLAVGFFA TSMAGARLAR RFGGKPPIAL
GALVLAAGHA LQFVNVAGWA GHTHVAAWMV PLLLVQGAGL GMVMAPLVST VLAGLPPQHA
GVASGVLSMV QQASNALGVA LIGILFYGRL GDTPDAAAYA SAFGVALVYL MVSALVVALL
HRRANRKPSA QV
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