Gene Vapar_4004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4004 
Symbol 
ID7974569 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4247287 
End bp4248540 
Gene Length1254 bp 
Protein Length417 aa 
Translation table11 
GC content72% 
IMG OID644794590 
Product40-residue YVTN family beta-propeller repeat protein 
Protein accessionYP_002945884 
Protein GI239816974 
COG category[S] Function unknown 
COG ID[COG3391] Uncharacterized conserved protein 
TIGRFAM ID[TIGR02276] 40-residue YVTN family beta-propeller repeat 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.540358 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCGCCA TTCCCGGGTT TGTGCGCATC CTCGTCGTTC TCGCGGCGCT GGGCGCTTCG 
GCCTTCTGCG CCTTCGCAGC CGGCCCCAAG ACCTACGTCG GCAATTTCAA GGACAGCACG
GTCAGCGTGA TCGACACCGG CACCGAGCGC GTGCTCGCCA CCGTGCCGGT GGCCACGGGG
CCGGACGGCA TCGTCATCTC ACCGGATGGG CGCAGCGTGT TCGTCAGCGG CTCCGGCGCC
TCGGCGGTGA GCGAGATCGA CGCAGCCAGC GACGGCGTGG CGCGCACCAT CGAGGTCGGC
AAGGGCCCGC AGGGCCTCGC CGCCACGGCC GACGGACGCT GGCTGCTGGT GGCCGTCAAC
GGCGACGACC GCGTGGCCTT CATCGACACC GCGACGCACG CCGTCGGCGC CACCGTGCCC
GTGCCCAAGC CGCACACCAT CGCCGTGCGG CCCGACGGCC GGCAGGCCTA CGTCGCCTCG
CAGGAGCCGG GGCACTTTGC GCTGGTGGTC GTCGACCTGG CGGCGCGCAC GGTGGTCACG
GAGATCCCGC TCGAGAAGGC GCCGCGCGAC CTGGAGTTCG GCCACGACGG CAAGGCGCTG
TACCTGACCC TGGCGGGCGT GCCCGCCGTG CAGGTGCTGG ACCCGGCGAC GGACCAGTGG
CTGGCGCCAA TACCGACCGG CGTGTCGCCC CACATCGCCC AGCACTTCGC CGGCATGGCG
AGCGGCGTGG TGGTCGTGCA GGGGCCGGGC GAGGTCTTGC TCTTCGACCC GGCGACGCGG
GCGCCGGGCC GCAGCATCGC CGTGGGCAAG CAGCCGCACT GGCTCGACCT GTCGGCCGAC
GGCAAGAAGC TGTGGGTGAG CAACGAAGGC TCCAACGACG TCAGCGTGGT CGACCTCGCA
GGCGGCCCGA TGCACACCGT GCCGGTCGGC ATTGCGCCGC GCAAGGTGGC CGTGCAGCGC
GCCGCGTCCG CAGGCGCCGC GCCTGCGGCG CAGGCCGGCG GTTCCGCGCA GGTGGCGATC
CGCAACTTCG CCTTCGAGCC GGCGCAGATC ACCGTCAAGG CGGGCCAGAG CGTGACCTGG
AAGAACGACG ACGGCGCGCC GCACGGCATC GTCTTCAAGG ACGGCACTGC GGGCATGGAC
CTCATGCTGC CCGGCAAGAC CTTCACGCAG ACTTTCGACA AGCCGGGCGT GCACGACTAC
GCCTGCTCAG TGCATTCCTA CATGACGGCG CGCGTGACGG TGCTCGCACC CTGA
 
Protein sequence
MIAIPGFVRI LVVLAALGAS AFCAFAAGPK TYVGNFKDST VSVIDTGTER VLATVPVATG 
PDGIVISPDG RSVFVSGSGA SAVSEIDAAS DGVARTIEVG KGPQGLAATA DGRWLLVAVN
GDDRVAFIDT ATHAVGATVP VPKPHTIAVR PDGRQAYVAS QEPGHFALVV VDLAARTVVT
EIPLEKAPRD LEFGHDGKAL YLTLAGVPAV QVLDPATDQW LAPIPTGVSP HIAQHFAGMA
SGVVVVQGPG EVLLFDPATR APGRSIAVGK QPHWLDLSAD GKKLWVSNEG SNDVSVVDLA
GGPMHTVPVG IAPRKVAVQR AASAGAAPAA QAGGSAQVAI RNFAFEPAQI TVKAGQSVTW
KNDDGAPHGI VFKDGTAGMD LMLPGKTFTQ TFDKPGVHDY ACSVHSYMTA RVTVLAP