Gene Vapar_3970 details

Gene Information

• Locus tag: Vapar_3970
• ID: 7974535
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 4213873
• End bp: 4214403
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644794556
• Product: CMP/dCMP deaminase zinc-binding
• Protein accession: YP_002945850
• Protein GI: 239816940
• COG category: [F] Nucleotide transport and metabolism; [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0590] Cytosine/adenosine deaminases

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.440685
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACTTCA GCAACAGCAA CCTCCAATCC ACCCTCCCCG AAGAAACCAC GCTCGACGAA 
CGCGACGGAC GCTACCTGCG CAAGGCCATC GTCTGGTCGC ATGCGGCGCG CCGCCGCGGC 
AACCGGCCCT TCGGATCGGT CATCGTCTCG GCGGCCGGCG AAGTGCTGGC CGAAGCGGCC 
AACAGCAACA CCGAATCCGG CGACTGCACG GCGCACGCGG AGATGAACGC GCTGCGCGCG 
CTCGCGGGGC GCGGCCTCAC GCGCGAAGAG CTTGCCGGCG CCACCATCTA TGCATCGGGC 
GAGCCCTGCG TGATGTGCGC GGGCGCGATC TTCTGGTCGA ACATCGGCCG CGTGGTGTTC 
GGCATCGACG CCGAGCGGCT GCGCGTGTTC CGCGGCGAGC GGCAGGACCA GCGCGATGCC 
GAGCTGTCGT GCCGCGACGT GTTCCGCGCC TCGCCGCATC CGATCGAATG CATCGGGCCC 
GCGCTGCTCG ACGAGGCCAG CGCTGCGCAC GACGGCGCCT GGGCCAGCTA G 

 

Protein sequence

MNFSNSNLQS TLPEETTLDE RDGRYLRKAI VWSHAARRRG NRPFGSVIVS AAGEVLAEAA 
NSNTESGDCT AHAEMNALRA LAGRGLTREE LAGATIYASG EPCVMCAGAI FWSNIGRVVF 
GIDAERLRVF RGERQDQRDA ELSCRDVFRA SPHPIECIGP ALLDEASAAH DGAWAS