Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3949 |
Symbol | |
ID | 7970378 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4191746 |
End bp | 4192450 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 644794535 |
Product | transcriptional regulator, GntR family |
Protein accession | YP_002945829 |
Protein GI | 239816919 |
COG category | [K] Transcription |
COG ID | [COG1802] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCACCG ACGTCAACCC CACCTCCATC GCCGAGCGCG TGGTCGAGGC CATCCTGGCG CAAAAGCTCG CGCCGGGCGA GCGGCTCGGC GAGCAGGCGC TGGCCGAGAA CTTCGCGGTG AGCCGGACCA TGGTGCGCGA GGCGCTCATG CAGCTGCAGG CGCGCGGCTT CGTCGAGGTG CAGTCCCGCC GCGGCTGGTA CGTGGTGGAG CCCTCGGCCG AGGAAGCGCG CGACGCCTTC TCGGCGCGGC GCATCGTCGA GGCGGGCATC CTGGCCGAAA GCGAAGGCCG GCCGCTGCAG AAGGCCATCC GCAAGCTGCG CGACCACATT GCCGACGAGC AGCGCGCCAT CGAGGGCGCC GATGCCGCCA CGCGCGCCTT CCTGCTGGCC GATTTCCACG TCTGCCTGGC CGAGCAGATG GGCCACCAGC TGCTGGTCGA CGTGCTGCGC GACCTCACGG CCCGCACCAC GCTGGCCGCC ACGCTCTACC AGTCCAGGCA CGAGGCCGGG CAGTCCTGCG CGGAGCACGG CGCCATCGTG GCCGCGCTGG AGGCCGGCGA CACGGCCCGG GCGCGCCAGC TGATGATCGA GCACATCGGC AACGTCGAGC GCTCGCTCGA GGTCGAAACC ACGGCCGGGC CCGACGCGCC CGCCCGGCTG CGCGCCACGC TGGCGCCGGT GGCGCTGCCG CGCGCCAGGC GCTGA
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Protein sequence | MATDVNPTSI AERVVEAILA QKLAPGERLG EQALAENFAV SRTMVREALM QLQARGFVEV QSRRGWYVVE PSAEEARDAF SARRIVEAGI LAESEGRPLQ KAIRKLRDHI ADEQRAIEGA DAATRAFLLA DFHVCLAEQM GHQLLVDVLR DLTARTTLAA TLYQSRHEAG QSCAEHGAIV AALEAGDTAR ARQLMIEHIG NVERSLEVET TAGPDAPARL RATLAPVALP RARR
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