| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3941 |
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| Symbol | |
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| ID | 7970370 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4181130 |
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| End bp | 4182617 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794527 |
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| Product | xanthine permease |
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| Protein accession | YP_002945821 |
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| Protein GI | 239816911 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG2233] Xanthine/uracil permeases |
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| TIGRFAM ID | [TIGR00801] uracil-xanthine permease
[TIGR03173] xanthine permease |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0162348 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGCCG ACACCCTTTC CACAGTCCAT CCGGTGGACC AGCGGCTGCC TTCGGGCAAG
CTCGCGGCCC TGGGCCTTCA GCATGTGCTG GTGATGTACG CAGGGGCCGT TGCGGTGCCG
CTGATCGTCG GGCGCGCGCT CAAGCTCTCG CCCGACGAGG TGGCGCTCCT GATCTCGGCC
GACCTGTTCT GCTGCGGCAT CGCCACGCTG ATCCAGGCGC TGGGCGCCAC GCAGTGGTTC
GGCATCAGGC TGCCGGTGAT GATGGGCGTG ACCTTCGCAT CGGTCGCGCC GATGGTGGCC
ATTGCCAACG CCAACCCGGG CCAGAACGGC GCGCAGCTGC TGTTCGGCGC GATCATCGGC
GCGGGCGTGG TGTCGATATT GATCGCGCCG CTGGTGAGCC GCATGCTGCG CTTCTTTCCG
CCGGTGGTCA CGGGCACCAT CATCGCGGTG ATCGGCATCA GCCTGATGCG CGTGGGCATC
AACTGGATCT TCGGCAACCC GGTGGGGCCG ACGGCGCCCG CGCTGGTGGA CCCGGTGTAT
GCCAAGTGGC TCGCCGAGGT GACCTCGCCG GGCAGCTCGA TCCCGGCAGT GCCCAAGGGC
TTTGCGATCA TGCCGACGGT TCCCAACCCC AAGTACGCGG ACCTCTCGGG CTTTGGCGTG
GCCGCGCTGG TGCTGGTGTC GATCCTGCTG ATCGTCAAGT ACGCCAAGGG CTTCGTCGCC
AACATCTCGG TGCTGCTGGG CATCGTGATT GGCGCGGTGG TGGCGTCGAT CACCGGGCTC
ATGACCTACG AGAAGGTGGG CAAGGCCGCG TGGGTCGACA TCGTGCTGCC CTTTCACTTC
GGCATGCCGC AGTTCGACCC GATCCTGATC CTCACGATGA CGCTCATCAT GATCGTGGTG
ATGATCGAGT CGACCGGCAT GTTCCTTGCG CTCGGCGAGA TGACCGACCG GAAGATCACG
CAGAAGGACC TGGCCAAGGG CCTGCGCACC GACGGCCTGG GCACGCTGAT CGGCGGCATC
TTCAATACCT TTCCGTACAC CAGCTTCTCG CAGAACGTGG GACTGGTGGC CGTCACGGGC
ATCAAGAGCC GGTACGTCTG CGTGGCCGGC GGCGTGATCC TGATCGTGCT GGGCCTGCTG
CCCAAGATGG CGGCGCTGGT CGAATCGCTG CCCACGGTGG TGCTGGGCGG CGCGGGCCTG
GTGATGTTCG GCATGGTGGC GGCCACGGGC ATCCGCATTC TCTCGGGCGT GGACTTCAAG
ACCAACCGGC ACAACGCGAT GATCGTGGCG GTGTCGATCG GCATCGGCAT GATTCCGCTC
ATTGCGCCCA ACTTCAAGCA GTGGATGCCG CATGCGATCC ACTCGCTGAT CGAGTCGGGC
ATCCTGCTGG CGTCGATCAG CGCGGTGCTG CTGAACCTGT TCCTCAATGG CGCGAAGCAC
GACGAAGAGG CGGTGATCGC GGCAGCCAAG CAGGCCGAAG CCCACTAG
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| Protein sequence | MTADTLSTVH PVDQRLPSGK LAALGLQHVL VMYAGAVAVP LIVGRALKLS PDEVALLISA
DLFCCGIATL IQALGATQWF GIRLPVMMGV TFASVAPMVA IANANPGQNG AQLLFGAIIG
AGVVSILIAP LVSRMLRFFP PVVTGTIIAV IGISLMRVGI NWIFGNPVGP TAPALVDPVY
AKWLAEVTSP GSSIPAVPKG FAIMPTVPNP KYADLSGFGV AALVLVSILL IVKYAKGFVA
NISVLLGIVI GAVVASITGL MTYEKVGKAA WVDIVLPFHF GMPQFDPILI LTMTLIMIVV
MIESTGMFLA LGEMTDRKIT QKDLAKGLRT DGLGTLIGGI FNTFPYTSFS QNVGLVAVTG
IKSRYVCVAG GVILIVLGLL PKMAALVESL PTVVLGGAGL VMFGMVAATG IRILSGVDFK
TNRHNAMIVA VSIGIGMIPL IAPNFKQWMP HAIHSLIESG ILLASISAVL LNLFLNGAKH
DEEAVIAAAK QAEAH
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