Gene Vapar_3909 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3909 
Symbol 
ID7970338 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4145420 
End bp4146340 
Gene Length921 bp 
Protein Length306 aa 
Translation table11 
GC content71% 
IMG OID644794495 
Producttranscriptional regulator, LysR family 
Protein accessionYP_002945789 
Protein GI239816879 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGCCA TGCATATCGA AAAGCTCGAC CTCAACCTGC TGCGGCTCTT CGATGCGGTC 
TTCCGCGCCC GCAGCGTGAG CCGTGCGGCC GACGCGCTGG GCCTCACGCA GCCGGCGGCC
AGCCATGGCC TCACGCGGCT GCGCCTCTTG CTGGGCGATG CGCTCTTCAC GCGTACCCCC
GGCGGCGTGG CGCCCACGCC GCGGGCGGAG CGGCTGGCGG TGCCGGTGCA GGCGGCGCTG
GCCATGCTGC AGCAGGCGCT GGCCGAGCCC GAGCGCTTCG ACCCGGCCGC TTCGCGCAAG
CTGTTCCGCA TCCACATGAG CGACATCGGC GAAGGCCGCT TCCTGCCCGC GCTGATGGCG
CGGCTGCGCG AGCTGGCGCC GGGCGTGCGC ATCGAGACCA TGCCGCTGGC CACCGGCGAC
ATTGCCGCCG CGCTCGACAG CGGCCGGATC GACTTCGCCT TCGGCTTTTT GCCCAAGGTG
AAGGACACGC AGCGCGCCCA GCTGCTGAAG GACCGCTACA TCGTGCTGCT GCGCAAGGGC
CACCCGTTCG TGACGAAGCG GCGCCGCAGC GGCCAGGCGC TGCTCGAAGC GCTGCAGGAG
CTCGACTACG TGGCGGTGCG CACGCACGCC GAGACGCTGC GCATCCTGCA GCTGCTGAAC
CTAGAGGATC GGCTGCGCCT GACCACCGAG CACTTCATGG TGCTGCCGGC CATCGTGCGC
GCCACCGACC TGGCGGTGGT GATGCCGCGC AACATCGCGC GCGGCTTTGC CGAGGAAGGC
GGCTATGCCA TCGTCGAGCC GCCGTTTCCG CTGCGCGACT TCACGGTGTC ACTGCACTGG
AGCAGGCGCT TCGAGGCCGA TCCGGCGAAC CGCTGGCTGC GCCAGGTGAT CACGGCGCTG
TTCTTCGAGC GGGCGGGGTA G
 
Protein sequence
MNAMHIEKLD LNLLRLFDAV FRARSVSRAA DALGLTQPAA SHGLTRLRLL LGDALFTRTP 
GGVAPTPRAE RLAVPVQAAL AMLQQALAEP ERFDPAASRK LFRIHMSDIG EGRFLPALMA
RLRELAPGVR IETMPLATGD IAAALDSGRI DFAFGFLPKV KDTQRAQLLK DRYIVLLRKG
HPFVTKRRRS GQALLEALQE LDYVAVRTHA ETLRILQLLN LEDRLRLTTE HFMVLPAIVR
ATDLAVVMPR NIARGFAEEG GYAIVEPPFP LRDFTVSLHW SRRFEADPAN RWLRQVITAL
FFERAG