Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3909 |
Symbol | |
ID | 7970338 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4145420 |
End bp | 4146340 |
Gene Length | 921 bp |
Protein Length | 306 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644794495 |
Product | transcriptional regulator, LysR family |
Protein accession | YP_002945789 |
Protein GI | 239816879 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGCCA TGCATATCGA AAAGCTCGAC CTCAACCTGC TGCGGCTCTT CGATGCGGTC TTCCGCGCCC GCAGCGTGAG CCGTGCGGCC GACGCGCTGG GCCTCACGCA GCCGGCGGCC AGCCATGGCC TCACGCGGCT GCGCCTCTTG CTGGGCGATG CGCTCTTCAC GCGTACCCCC GGCGGCGTGG CGCCCACGCC GCGGGCGGAG CGGCTGGCGG TGCCGGTGCA GGCGGCGCTG GCCATGCTGC AGCAGGCGCT GGCCGAGCCC GAGCGCTTCG ACCCGGCCGC TTCGCGCAAG CTGTTCCGCA TCCACATGAG CGACATCGGC GAAGGCCGCT TCCTGCCCGC GCTGATGGCG CGGCTGCGCG AGCTGGCGCC GGGCGTGCGC ATCGAGACCA TGCCGCTGGC CACCGGCGAC ATTGCCGCCG CGCTCGACAG CGGCCGGATC GACTTCGCCT TCGGCTTTTT GCCCAAGGTG AAGGACACGC AGCGCGCCCA GCTGCTGAAG GACCGCTACA TCGTGCTGCT GCGCAAGGGC CACCCGTTCG TGACGAAGCG GCGCCGCAGC GGCCAGGCGC TGCTCGAAGC GCTGCAGGAG CTCGACTACG TGGCGGTGCG CACGCACGCC GAGACGCTGC GCATCCTGCA GCTGCTGAAC CTAGAGGATC GGCTGCGCCT GACCACCGAG CACTTCATGG TGCTGCCGGC CATCGTGCGC GCCACCGACC TGGCGGTGGT GATGCCGCGC AACATCGCGC GCGGCTTTGC CGAGGAAGGC GGCTATGCCA TCGTCGAGCC GCCGTTTCCG CTGCGCGACT TCACGGTGTC ACTGCACTGG AGCAGGCGCT TCGAGGCCGA TCCGGCGAAC CGCTGGCTGC GCCAGGTGAT CACGGCGCTG TTCTTCGAGC GGGCGGGGTA G
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Protein sequence | MNAMHIEKLD LNLLRLFDAV FRARSVSRAA DALGLTQPAA SHGLTRLRLL LGDALFTRTP GGVAPTPRAE RLAVPVQAAL AMLQQALAEP ERFDPAASRK LFRIHMSDIG EGRFLPALMA RLRELAPGVR IETMPLATGD IAAALDSGRI DFAFGFLPKV KDTQRAQLLK DRYIVLLRKG HPFVTKRRRS GQALLEALQE LDYVAVRTHA ETLRILQLLN LEDRLRLTTE HFMVLPAIVR ATDLAVVMPR NIARGFAEEG GYAIVEPPFP LRDFTVSLHW SRRFEADPAN RWLRQVITAL FFERAG
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