| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3895 |
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| Symbol | |
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| ID | 7970324 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4127085 |
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| End bp | 4127978 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644794481 |
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| Product | amidohydrolase 2 |
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| Protein accession | YP_002945775 |
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| Protein GI | 239816865 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3618] Predicted metal-dependent hydrolase of the TIM-barrel fold |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00259115 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGTTC CCCACAGCAG CGGCACGCGC AAGCCCGCCT GCACCGCGCC CGCGGGCGCC
TGCGATGCGC ACATGCATGT CTACGACCGC CGCTTCGCAC TCCACGGCTC GCGCGATGCG
ATGGTCGACG ACGCCACGGC CGCCGACTAC CGCCTGCTGC AGCAGCGCAT CGGCACCGAG
CGCACGGTCG TCGTGCAGCC GCGCGTGCAT GGCACCGACA ACAGCGTGAC GCTCGATGCC
ATTCGCACGC TCGGCGCGGC GCACACCCGC GGCGTGGCCG TGGTCCGGCC CGACGTGAGC
GATGCCGAGC TCGAGCGCCT GCATGCGGGC GGCATCCGCG GCATCCGCTT CACGCTCTAT
ACGGCCGCCA ATGCGGCGAC CGGCTTCGAA ATGGTCGAGC CGCTCGCACA GCGCGTGCAT
GCGCTGGGCT GGCATGTGCA GTTGCACTGG AACGCCGACC AGATCGCCGG GCATGCGGCC
CTGCTCGCGC GGCTGCCCTG CACGATCGTG TTCGACCACC TCGCGCGGCT GCCGCTGCCC
GGTGCAATGG CGCATCCCGC GTTCGATGTC GTGAGCCGGC TGCGCGACAA CGGCCGCACC
TGGATCAAGC TCTCGGGCGC CTACCTCGAT TCGAAATCCG GCGCCGCAGG CGGCTATGCA
GACACGAGCG CCATCGCACA GGCCTGGGTC CGCCAGGCGC CGGAGCGCGT GGTGTGGGGC
AGCGACTGGC CGCATCCGAC CGAGCCTGCG GCCGCCAAGC CCGACGACGC GCTGCTGTTC
GACCTGCTGG GCCAATGGGT TCCGGACGAG GCCCAGCGCC GCCGCGTGCT CGTCGACAAC
CCCGCGCTGC TGTACGACTT TCCTGAAACG ACGAAGACCG AGACGACCGA ATGA
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| Protein sequence | MQVPHSSGTR KPACTAPAGA CDAHMHVYDR RFALHGSRDA MVDDATAADY RLLQQRIGTE
RTVVVQPRVH GTDNSVTLDA IRTLGAAHTR GVAVVRPDVS DAELERLHAG GIRGIRFTLY
TAANAATGFE MVEPLAQRVH ALGWHVQLHW NADQIAGHAA LLARLPCTIV FDHLARLPLP
GAMAHPAFDV VSRLRDNGRT WIKLSGAYLD SKSGAAGGYA DTSAIAQAWV RQAPERVVWG
SDWPHPTEPA AAKPDDALLF DLLGQWVPDE AQRRRVLVDN PALLYDFPET TKTETTE
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