Gene Vapar_3859 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3859 
Symbol 
ID7969716 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4083926 
End bp4086631 
Gene Length2706 bp 
Protein Length901 aa 
Translation table11 
GC content67% 
IMG OID644794445 
Producttype VI secretion system Vgr family protein 
Protein accessionYP_002945739 
Protein GI239816829 
COG category[S] Function unknown 
COG ID[COG3501] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCGCC GCGTCACCAT CCAGACGCCG CTGGGCGAGG CACTGCAATT CCATCGGCTG 
GCGGGGCGCG AGGCGCTCAG CCAGGCCTAC GCCTTCGACC TGGAATTGCT GGGTAGCAGC
AATGCGCTGG ACCCCAAGTC CATCCTGGGC AAGCCCGCCA CCGTCGTGAT GGAGACCGAG
AGCGGCGCCC CGCGCTACCT GGCTGGCCTC GTCACCCGCT TCGGCCTGTC GCACGAAGAC
GACCGCCAGG CCTTCTACAG GATGCGGCTG CGCCCGTGGC TGTGGCTGGC CACGCGCCGA
AGCGACTTCC GCATCTTCCA GGACCAGACC GTGCCCGAGA TCGTCGCGGC CGTGCTGGGC
CGCTACGGCC ACCCGATGGA GCAGAAGCTC CACCGCAGCT ACCGCCCGTG GACCTACTGC
GTGCAATACC ACGAGAGCGA CTTCGACTTC ATCTCGCGGC TGTGCGAGCA CGAAGGTATC
TACTACCACT TCCGCCACAA AGCCGAGCAG CACGTGCTCG TGTTCGCGGA CGACATCGCC
AGCTCGCACG CCCCGCTGCC CGACGGCGAG ACCGTGCGCT ACCACCCGCA CGAGAAAGCC
GGCATGACCG GTGGGCTGGA GGCCAGCGAA CGCATCTACG AATGGGCGTC CTCGGATGAA
GTGCGCCCAG GCCATTACTT CAACGACGAC TACGACTTCG AGAAGCCCCG AGCCGAGCTG
TCGCACCTGC GGCAAATGCC GCCCGGGCAC GACCACGACG ACTTCGAACG CTATGAATGG
CCGGGCGGCT TCACCCAGCA CGACGATGGC GAAAGCTATG CGCGCGTCCG CACCGAAGAA
CAGTTGAGCG AACGCAGCCG GGCCACAGGC CGCGCCAACC GGCGCGATCT GGCCCCGGGC
TGCACCTTCA CGCTCACGCA CCATCCGCGT CAAGATCAGA ACAGGGAGCA TCTGCTGCTG
GCCGTCGACT ACGACCTTCA AGAGAACCTG CAGGCCAGCG AAGGCGCGAA CGCCTCCGAA
GGCTCGGTGC AGCGCTTCGC CTTCGAGGCC CAGCCCACCA GCTATGCGTG GCGTCCTCCG
CGCACCACGC CCAAGCCGTG GACCGAGGGC CCGCAGACCG CGTTGGTGGT CGGCCCGGCC
GGCGAAGAAA TCTGGGCAGA CCAATATGGC CGCGTCAAGG TGCAGTTCCA CTGGGACCGC
ATCGGCGAGC GCAACGAGAA CTCCAGCTGC TGGGTGCGCG TGTCCACGGC CTGGGCCGGC
GCCACCTTCG GCGCGGCCGC GCTGCCGCGC ATCGGCCAGG AAGTCATCGT CGACTTCCTC
AACGGCGACC CCGACCACCC GATCGTCACC GGCCGGGTGC ACAACGCCGA CGAAATGCCC
GCGTGGGAAC TGCCGCATCA GAAGCAGTTG TCAGGCCTGC GCAGCCGCGA GCTCGGTGGT
GGCCAAAGCA ACCACCTCGC GCTCGATGAT TCGAGCGGCA AGGTACAAGT CCAGCTCAAG
AGCGACCACC AGAGCACCAG CCTGAGCCTG GGCCACGTCG GACGCATCGA CGATGTCTCC
GGCCGCCGGG ACGACCGGGG CCAGGGCGCC GAACTGCGCA CCGATGGCCA CGGCGCCCTG
CGGGCCGGCC AGGGCCTGCT GCTGAGCACC GAGGCGCGGC CCAACGCCCA GGGCCACATC
ACCGACATGC CCGAGACGGT CGCCCGGCTC ACGCAAGGAC GCGACCTGCA TGAAAGCCTG
AGCCAGGCCG CGCAGGCGGC CAAAGCGCAC GAGGCCGGCG ACCAGGACGA GGTAACCAAG
GCGCTGAAGG CGCAGAACGA CGCCATCAAG GGCAGCGGCG GAGACAAGGC GCACGGCCTC
TTCCCCGAAT TCCAGGAGCC GCACCTCACG CTGGCCAGCC CCGCGGGCAT CCAGACGACA
GCGCAGGGCT CGACCCACAT CGTGAGCGGC GAACACACCG CCATCACCAG CGGCGCGCAC
ACCAGCGTGG TCACCGGCAA CAGCTTCCTG GTGAGCGCCA AGAATGCGGT GCGCCTGTCC
GCGGCCAACG CCGGCATCCG CATGACCGCC GCGAAGGACG ACATCGACAT CACGGCCATG
AAGGCCAGCA TCAACGCCCT GGCCAAGCTC AACATCAAGA TGGAGGCCAA CCGCATCACC
ATCACGGCCA GGGACGAGGT GCTGATCAAC GGCGGCTCCA GCTACACCCG TTGGAATGCG
AATGGCATCG AGAGCGGCAC CAATGGGGTG TGGCGGGCGC ATGCGGCTTC GCACAGCCTC
GTGGGGCCGG ACAACAAACC GGTGCCGCCG ATGGCACCGG CGACCGTGGT GCTGCAGGAA
GCGCCTCCCG ACCCGCAGAT CGCGTTCTCC ATGCAGCACG TTCCGGGGTT CTCGCCAATG
CTCTTTGCGG GCCAGGCCTA CACGCTGCTG AAGAACGGTG CTGAAATCCG CAAAGGGCTG
TTCGATGATT ACGGCCGGCT GACCATCGAG CAGGCCGAAA AGGGCGCGCG CTACCAAGTC
CGGCTCTTCA ATGGAACTGT CCACGATGTT CCGGTGGCAC AGGACCGCAT GGAACGCGAT
CCCGAACAGT CCCAGTACAA CGAACATCAG CTGTCGAACA AGGGATACCG CGGCGACGGG
CAGGACAGTT CCAAGCGACG GACGCAGCGC GAGCGCGGCT CGGATTCCGG CCAGGCGTCC
GCCTGA
 
Protein sequence
MKRRVTIQTP LGEALQFHRL AGREALSQAY AFDLELLGSS NALDPKSILG KPATVVMETE 
SGAPRYLAGL VTRFGLSHED DRQAFYRMRL RPWLWLATRR SDFRIFQDQT VPEIVAAVLG
RYGHPMEQKL HRSYRPWTYC VQYHESDFDF ISRLCEHEGI YYHFRHKAEQ HVLVFADDIA
SSHAPLPDGE TVRYHPHEKA GMTGGLEASE RIYEWASSDE VRPGHYFNDD YDFEKPRAEL
SHLRQMPPGH DHDDFERYEW PGGFTQHDDG ESYARVRTEE QLSERSRATG RANRRDLAPG
CTFTLTHHPR QDQNREHLLL AVDYDLQENL QASEGANASE GSVQRFAFEA QPTSYAWRPP
RTTPKPWTEG PQTALVVGPA GEEIWADQYG RVKVQFHWDR IGERNENSSC WVRVSTAWAG
ATFGAAALPR IGQEVIVDFL NGDPDHPIVT GRVHNADEMP AWELPHQKQL SGLRSRELGG
GQSNHLALDD SSGKVQVQLK SDHQSTSLSL GHVGRIDDVS GRRDDRGQGA ELRTDGHGAL
RAGQGLLLST EARPNAQGHI TDMPETVARL TQGRDLHESL SQAAQAAKAH EAGDQDEVTK
ALKAQNDAIK GSGGDKAHGL FPEFQEPHLT LASPAGIQTT AQGSTHIVSG EHTAITSGAH
TSVVTGNSFL VSAKNAVRLS AANAGIRMTA AKDDIDITAM KASINALAKL NIKMEANRIT
ITARDEVLIN GGSSYTRWNA NGIESGTNGV WRAHAASHSL VGPDNKPVPP MAPATVVLQE
APPDPQIAFS MQHVPGFSPM LFAGQAYTLL KNGAEIRKGL FDDYGRLTIE QAEKGARYQV
RLFNGTVHDV PVAQDRMERD PEQSQYNEHQ LSNKGYRGDG QDSSKRRTQR ERGSDSGQAS
A