Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3859 |
Symbol | |
ID | 7969716 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4083926 |
End bp | 4086631 |
Gene Length | 2706 bp |
Protein Length | 901 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644794445 |
Product | type VI secretion system Vgr family protein |
Protein accession | YP_002945739 |
Protein GI | 239816829 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCGCC GCGTCACCAT CCAGACGCCG CTGGGCGAGG CACTGCAATT CCATCGGCTG GCGGGGCGCG AGGCGCTCAG CCAGGCCTAC GCCTTCGACC TGGAATTGCT GGGTAGCAGC AATGCGCTGG ACCCCAAGTC CATCCTGGGC AAGCCCGCCA CCGTCGTGAT GGAGACCGAG AGCGGCGCCC CGCGCTACCT GGCTGGCCTC GTCACCCGCT TCGGCCTGTC GCACGAAGAC GACCGCCAGG CCTTCTACAG GATGCGGCTG CGCCCGTGGC TGTGGCTGGC CACGCGCCGA AGCGACTTCC GCATCTTCCA GGACCAGACC GTGCCCGAGA TCGTCGCGGC CGTGCTGGGC CGCTACGGCC ACCCGATGGA GCAGAAGCTC CACCGCAGCT ACCGCCCGTG GACCTACTGC GTGCAATACC ACGAGAGCGA CTTCGACTTC ATCTCGCGGC TGTGCGAGCA CGAAGGTATC TACTACCACT TCCGCCACAA AGCCGAGCAG CACGTGCTCG TGTTCGCGGA CGACATCGCC AGCTCGCACG CCCCGCTGCC CGACGGCGAG ACCGTGCGCT ACCACCCGCA CGAGAAAGCC GGCATGACCG GTGGGCTGGA GGCCAGCGAA CGCATCTACG AATGGGCGTC CTCGGATGAA GTGCGCCCAG GCCATTACTT CAACGACGAC TACGACTTCG AGAAGCCCCG AGCCGAGCTG TCGCACCTGC GGCAAATGCC GCCCGGGCAC GACCACGACG ACTTCGAACG CTATGAATGG CCGGGCGGCT TCACCCAGCA CGACGATGGC GAAAGCTATG CGCGCGTCCG CACCGAAGAA CAGTTGAGCG AACGCAGCCG GGCCACAGGC CGCGCCAACC GGCGCGATCT GGCCCCGGGC TGCACCTTCA CGCTCACGCA CCATCCGCGT CAAGATCAGA ACAGGGAGCA TCTGCTGCTG GCCGTCGACT ACGACCTTCA AGAGAACCTG CAGGCCAGCG AAGGCGCGAA CGCCTCCGAA GGCTCGGTGC AGCGCTTCGC CTTCGAGGCC CAGCCCACCA GCTATGCGTG GCGTCCTCCG CGCACCACGC CCAAGCCGTG GACCGAGGGC CCGCAGACCG CGTTGGTGGT CGGCCCGGCC GGCGAAGAAA TCTGGGCAGA CCAATATGGC CGCGTCAAGG TGCAGTTCCA CTGGGACCGC ATCGGCGAGC GCAACGAGAA CTCCAGCTGC TGGGTGCGCG TGTCCACGGC CTGGGCCGGC GCCACCTTCG GCGCGGCCGC GCTGCCGCGC ATCGGCCAGG AAGTCATCGT CGACTTCCTC AACGGCGACC CCGACCACCC GATCGTCACC GGCCGGGTGC ACAACGCCGA CGAAATGCCC GCGTGGGAAC TGCCGCATCA GAAGCAGTTG TCAGGCCTGC GCAGCCGCGA GCTCGGTGGT GGCCAAAGCA ACCACCTCGC GCTCGATGAT TCGAGCGGCA AGGTACAAGT CCAGCTCAAG AGCGACCACC AGAGCACCAG CCTGAGCCTG GGCCACGTCG GACGCATCGA CGATGTCTCC GGCCGCCGGG ACGACCGGGG CCAGGGCGCC GAACTGCGCA CCGATGGCCA CGGCGCCCTG CGGGCCGGCC AGGGCCTGCT GCTGAGCACC GAGGCGCGGC CCAACGCCCA GGGCCACATC ACCGACATGC CCGAGACGGT CGCCCGGCTC ACGCAAGGAC GCGACCTGCA TGAAAGCCTG AGCCAGGCCG CGCAGGCGGC CAAAGCGCAC GAGGCCGGCG ACCAGGACGA GGTAACCAAG GCGCTGAAGG CGCAGAACGA CGCCATCAAG GGCAGCGGCG GAGACAAGGC GCACGGCCTC TTCCCCGAAT TCCAGGAGCC GCACCTCACG CTGGCCAGCC CCGCGGGCAT CCAGACGACA GCGCAGGGCT CGACCCACAT CGTGAGCGGC GAACACACCG CCATCACCAG CGGCGCGCAC ACCAGCGTGG TCACCGGCAA CAGCTTCCTG GTGAGCGCCA AGAATGCGGT GCGCCTGTCC GCGGCCAACG CCGGCATCCG CATGACCGCC GCGAAGGACG ACATCGACAT CACGGCCATG AAGGCCAGCA TCAACGCCCT GGCCAAGCTC AACATCAAGA TGGAGGCCAA CCGCATCACC ATCACGGCCA GGGACGAGGT GCTGATCAAC GGCGGCTCCA GCTACACCCG TTGGAATGCG AATGGCATCG AGAGCGGCAC CAATGGGGTG TGGCGGGCGC ATGCGGCTTC GCACAGCCTC GTGGGGCCGG ACAACAAACC GGTGCCGCCG ATGGCACCGG CGACCGTGGT GCTGCAGGAA GCGCCTCCCG ACCCGCAGAT CGCGTTCTCC ATGCAGCACG TTCCGGGGTT CTCGCCAATG CTCTTTGCGG GCCAGGCCTA CACGCTGCTG AAGAACGGTG CTGAAATCCG CAAAGGGCTG TTCGATGATT ACGGCCGGCT GACCATCGAG CAGGCCGAAA AGGGCGCGCG CTACCAAGTC CGGCTCTTCA ATGGAACTGT CCACGATGTT CCGGTGGCAC AGGACCGCAT GGAACGCGAT CCCGAACAGT CCCAGTACAA CGAACATCAG CTGTCGAACA AGGGATACCG CGGCGACGGG CAGGACAGTT CCAAGCGACG GACGCAGCGC GAGCGCGGCT CGGATTCCGG CCAGGCGTCC GCCTGA
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Protein sequence | MKRRVTIQTP LGEALQFHRL AGREALSQAY AFDLELLGSS NALDPKSILG KPATVVMETE SGAPRYLAGL VTRFGLSHED DRQAFYRMRL RPWLWLATRR SDFRIFQDQT VPEIVAAVLG RYGHPMEQKL HRSYRPWTYC VQYHESDFDF ISRLCEHEGI YYHFRHKAEQ HVLVFADDIA SSHAPLPDGE TVRYHPHEKA GMTGGLEASE RIYEWASSDE VRPGHYFNDD YDFEKPRAEL SHLRQMPPGH DHDDFERYEW PGGFTQHDDG ESYARVRTEE QLSERSRATG RANRRDLAPG CTFTLTHHPR QDQNREHLLL AVDYDLQENL QASEGANASE GSVQRFAFEA QPTSYAWRPP RTTPKPWTEG PQTALVVGPA GEEIWADQYG RVKVQFHWDR IGERNENSSC WVRVSTAWAG ATFGAAALPR IGQEVIVDFL NGDPDHPIVT GRVHNADEMP AWELPHQKQL SGLRSRELGG GQSNHLALDD SSGKVQVQLK SDHQSTSLSL GHVGRIDDVS GRRDDRGQGA ELRTDGHGAL RAGQGLLLST EARPNAQGHI TDMPETVARL TQGRDLHESL SQAAQAAKAH EAGDQDEVTK ALKAQNDAIK GSGGDKAHGL FPEFQEPHLT LASPAGIQTT AQGSTHIVSG EHTAITSGAH TSVVTGNSFL VSAKNAVRLS AANAGIRMTA AKDDIDITAM KASINALAKL NIKMEANRIT ITARDEVLIN GGSSYTRWNA NGIESGTNGV WRAHAASHSL VGPDNKPVPP MAPATVVLQE APPDPQIAFS MQHVPGFSPM LFAGQAYTLL KNGAEIRKGL FDDYGRLTIE QAEKGARYQV RLFNGTVHDV PVAQDRMERD PEQSQYNEHQ LSNKGYRGDG QDSSKRRTQR ERGSDSGQAS A
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