| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3858 |
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| Symbol | |
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| ID | 7969715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4082109 |
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| End bp | 4083584 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794444 |
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| Product | transcriptional regulator, GntR family with aminotransferase domain |
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| Protein accession | YP_002945738 |
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| Protein GI | 239816828 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCGGC CACCCCGCAA TGCCACCGCC ACCGCATGGC TCGAATCCCC GCTCGCCAGG
GAGCGCGAGG CCGGCCCGAT GCAGCGCCAG CTGCACGAGC GCCTGAAGCG CGCCATTCTC
GATGGCGGCC TGGCGCCGGG CAGCCGGCTG CCCGGTTCGC GCGCGCTGGC CGAGGCGCTC
TCGGTTTCCC GCAACACCGT CACCGCGGCC TACGAGCACC TGGCGGCCGA AGGCTATGTG
CAGCCCGACC GGCAGGGCAC GCGCGTGACC GAGCTGGCGC CCGCAAAGGT CATGCGTGCC
GCCAGATCCG GCGCTGCACC GGCCACGGCA CGGCGGCTCG CACGCATCCA GCCTGGCACG
CCCCGCGCCG AGATGGACGC CGCCCTGCGG CCTGGCATGC CCGCGCTCTC GCACTTTCCC
GCGGCCGCAT GGCGCCGCGC CGTCGACCGT GCGATCCGCA GTGCCAGCCC CGCCACGCTC
GGCTATGGCG ATCCGCTCGG CGAACCGCCG CTGCGCGCGG CCATCGCGCG GCACCTGGCG
ATTGCGCGCG GCGTGCGCTG CGAGCCGCAC CAGGTCGTGA TCGCCGAGGG CGCGCAGGAA
GCCATTGCGC TGTGCGTGCG GCTGCTGTCG AACCCCGGCG ATACGGGATG GGTCGAAGAC
CCGGGCTACC GCGGCGCGAG GGCAGCGATG CATGCCGGCG ACATGCGCAT CGTGCCGATG
CGCGTCGATG CCGAAGGCCT GTGCACGAGC GAACGCGACT GGCACAGGCA CCCGCCCCGG
CTGGTCTACG CCACGCCTTC GCACCAGTAC CCGGCCGGTG CGGTGCTGAG CATCGCGCGC
CGGCTGGCGC TGATCGCACA GGCGCGCCGC CACGGCGCCT GGATCATCGA GGACGACTAC
GACAGCGAGT TCCGCCACAC CGGCGAACCC ATCGGCGCGA TGCAGGGCTT GGTGAACGAC
GCGCCGGTGC TCTACGTGGG CACCTTCAGC AAGACGATGT TTCCATCGCT GCGGCTGGGC
TTCGTGGTGC TGCCCGCGCC GCTCATGGCC ACGGTGCAGA AGCCGCTCGA GGAAATGCTG
CGCGGCGGGC ACCGCCACGA GCAGCTGGCG ATGGCCGACT TCATCGAGAG CGGCCAGTTC
AGCCGGCACC TGGGCCGCAT GCGGCGCCTT TACCGCGAGC GGCAGCAGGC GCTGCGGCTG
GCGCTCGCAC GGCACTTCAA GGTGCCGCAC GAGATCGACG GCGGCTACTG CGGACTGCAC
CTCACGGTGC GGCTGCCGCC GCGCTTCGAC GACCAGCGCA TCGCCGCCGA TGCGCTGCGC
CACCGGCTCG CGCCCACCGC GCTGTCGAGC TTTGCGATGC GGCCGCGGCC TTCGGACAAC
GGATTGGTGC TGGGCTATGG CAACACATCG GCGGAGCTCT TCGAGCCGCT GGTCAAAAGA
CTGTCGCAGC TGGCGCGTGC GGCGGAACGC AATTAA
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| Protein sequence | MSRPPRNATA TAWLESPLAR EREAGPMQRQ LHERLKRAIL DGGLAPGSRL PGSRALAEAL
SVSRNTVTAA YEHLAAEGYV QPDRQGTRVT ELAPAKVMRA ARSGAAPATA RRLARIQPGT
PRAEMDAALR PGMPALSHFP AAAWRRAVDR AIRSASPATL GYGDPLGEPP LRAAIARHLA
IARGVRCEPH QVVIAEGAQE AIALCVRLLS NPGDTGWVED PGYRGARAAM HAGDMRIVPM
RVDAEGLCTS ERDWHRHPPR LVYATPSHQY PAGAVLSIAR RLALIAQARR HGAWIIEDDY
DSEFRHTGEP IGAMQGLVND APVLYVGTFS KTMFPSLRLG FVVLPAPLMA TVQKPLEEML
RGGHRHEQLA MADFIESGQF SRHLGRMRRL YRERQQALRL ALARHFKVPH EIDGGYCGLH
LTVRLPPRFD DQRIAADALR HRLAPTALSS FAMRPRPSDN GLVLGYGNTS AELFEPLVKR
LSQLARAAER N
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