Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3843 |
Symbol | |
ID | 7969700 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4065227 |
End bp | 4066273 |
Gene Length | 1047 bp |
Protein Length | 348 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644794429 |
Product | transcriptional regulator, LysR family |
Protein accession | YP_002945723 |
Protein GI | 239816813 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACGGCC TCGATCTCAT CAAAACATTC CGCGAAGTGG CGTTCCGGCG CAGCTTCTCC CGCGCGGCCA TTTCGCTCGG CATGTCGAAA GCCACGGTCA GCCGCTACGT GGCCGAACTC GAAACGCGCA GCGGCGTGCG CCTGCTCAAC CGCTCCACGC GTTCGCTGAG CCTGACCGAT GCCGGCCAGG TACTGCTCGA CCGCAGCACC GAGCTGGTGG CCATGGCCGA GAACACGCTC AACGACCTGC AGGCCCACGG CTCGCACCCG CAGGGGCGGC TTCGCATGAG CGCGCCGCAC GGGCTGATCG CGGGCTGGCT GTCCGACGTG ATCGCCGAGT TCATCCAGCT CTACCCCGAC GTGTACGTGA GCCTGGTGTT CACCAACGAC GACCTCGACC TGATCGAAGA AGGCATCGAC ATCCACCTGA CGGGCGGGCG CATCGACGAC ATGAACCTGA TCGTGCGCCG GCTGGTGCCG TTCGACATGG TGGTCTGCGC GAGCCCGGCC TACTGGGCGC GGCGCGGCAT TCCCGCGGTG CCCGAAGACC TGGGCCGCCA CGACGTGCTG AGCTATTCGG CCAAGCCCAC CACCCACCTG CCCTTCGAGA CCGGCGGCAA GGCGGTCGAG GTGCCGGTGC ACAGCCGCAT GGAGGCCAAC GACGCCGTTG CGCTCATCGA GCTGGCGTTG CGCGGCGCGG GCGTGGCCTA CGTGCCCGAG CCGCTGGCGC AGTCGCACCT GGAGCGCGGC GCGCTGGTGC CGGTGCTGCG CGAGCACATG CCGAGCGACC ACTGGCTGTA TGCCGCCTAC TCGCAGCGCC GCCACAACAG CGCCGCGATG CGCACCATGC TCGACTTCCT GGAGCAGTCG ATGGCCCGGC ACGGCAATCC GCCCGCGATG CCGCCGCTGC CGCCCGCGCT GCAGGTGCTG GCCTCTCCTC CCTCTTCTTC TGTGGCTGCT GCCGCTACAT GCGCCCTTTC CAGGGTACCA GGCGCCGCTC GAGCCACCGC ATCAGCAGGT CGAACAGATA GGCCACCACG CCGATGA
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Protein sequence | MDGLDLIKTF REVAFRRSFS RAAISLGMSK ATVSRYVAEL ETRSGVRLLN RSTRSLSLTD AGQVLLDRST ELVAMAENTL NDLQAHGSHP QGRLRMSAPH GLIAGWLSDV IAEFIQLYPD VYVSLVFTND DLDLIEEGID IHLTGGRIDD MNLIVRRLVP FDMVVCASPA YWARRGIPAV PEDLGRHDVL SYSAKPTTHL PFETGGKAVE VPVHSRMEAN DAVALIELAL RGAGVAYVPE PLAQSHLERG ALVPVLREHM PSDHWLYAAY SQRRHNSAAM RTMLDFLEQS MARHGNPPAM PPLPPALQVL ASPPSSSVAA AATCALSRVP GAARATASAG RTDRPPRR
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