Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3822 |
Symbol | |
ID | 7969679 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4039919 |
End bp | 4040869 |
Gene Length | 951 bp |
Protein Length | 316 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644794408 |
Product | transposase IS116/IS110/IS902 family protein |
Protein accession | YP_002945702 |
Protein GI | 239816792 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3547] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.357564 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGAAC CTGTCTACGT TGGCATCGAT ATCGCCAAGG CCAGCTTCGA GGTGGCCGCC AGTGGCGAAA CACAAACCCT GAGCTTGAGC AACGACGAGG CCGGCCATGC CGAGTTGTGC CAGGTACTCG TGCCGCTGGT GCCTCGCCTG ATCCTGCTGG AGGCCACCGG TGGCCATGAG CAGGGCCTGG CGCTCGCGCT GGCAGCCGCT GGACTGCGCG TGTCGGTCAT CAACCCGCGA CAGGCGCGCG ACTTTGCGCG CTGCATGGGC AAGCTGGCCA AGACCGATCG CATCGATGCG CAGATGCTTC GCGGGTTCGC CCAACTGCTC GACGCCCAGG GCCATGAGCC GCGCGCGCTG GCCGACGAGC AGCAGCGTGA ACTCACCGCC ATGGTGGCTC GTCGACGCCA ACTGGTGGCC ATGCTCGTAG CCGAACGCCA ACGCCTTGCG CTGGCTCATC CGAAGGCCAA GGCGAGCATC CTGGCAGTCA TGGATGCCAT CGCTGCCCAG CTCCATGACA TCGATGGCGA GCTGCGCGAG CACGTGCGCA TGCATCACGC GGACCTGGCA CGCCTGCTGA CCTCGGTCAA GGGCGTGGGG CCGACCACGG CCAGCACCCT GCTGGCGCAG TTGCCCGAAC TGGGCAAGCT CAACCGCAAG CAGATCACTT CCCTGGTGGG CTTGGCTCCC GTCAATCGTG ACTCGGGCAC CTTGCGCGGG CAACGTCACA TCTTCGGCGG ACGCGCAGAC GTTCGCCGCG TGCTGTACGT CGCCGCCTTG GTAGGCACGC GATTCAATCC CGTGCTCAAA GCCTTCTATG CAAGCCTGCT GGCCGCAGGC AAGCCAAAGA AGGTCGCCTT GGTGGCTTGT ATGCACAAGC TGCTTGTCAT CCTCAACGCC ATCGCCAGAA CCAGGCAGCC CTGGCGTGAC GACTTTGCTG TGGCGACTTG A
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Protein sequence | MSEPVYVGID IAKASFEVAA SGETQTLSLS NDEAGHAELC QVLVPLVPRL ILLEATGGHE QGLALALAAA GLRVSVINPR QARDFARCMG KLAKTDRIDA QMLRGFAQLL DAQGHEPRAL ADEQQRELTA MVARRRQLVA MLVAERQRLA LAHPKAKASI LAVMDAIAAQ LHDIDGELRE HVRMHHADLA RLLTSVKGVG PTTASTLLAQ LPELGKLNRK QITSLVGLAP VNRDSGTLRG QRHIFGGRAD VRRVLYVAAL VGTRFNPVLK AFYASLLAAG KPKKVALVAC MHKLLVILNA IARTRQPWRD DFAVAT
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