Gene Vapar_3822 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3822 
Symbol 
ID7969679 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4039919 
End bp4040869 
Gene Length951 bp 
Protein Length316 aa 
Translation table11 
GC content65% 
IMG OID644794408 
Producttransposase IS116/IS110/IS902 family protein 
Protein accessionYP_002945702 
Protein GI239816792 
COG category[L] Replication, recombination and repair 
COG ID[COG3547] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.357564 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGAAC CTGTCTACGT TGGCATCGAT ATCGCCAAGG CCAGCTTCGA GGTGGCCGCC 
AGTGGCGAAA CACAAACCCT GAGCTTGAGC AACGACGAGG CCGGCCATGC CGAGTTGTGC
CAGGTACTCG TGCCGCTGGT GCCTCGCCTG ATCCTGCTGG AGGCCACCGG TGGCCATGAG
CAGGGCCTGG CGCTCGCGCT GGCAGCCGCT GGACTGCGCG TGTCGGTCAT CAACCCGCGA
CAGGCGCGCG ACTTTGCGCG CTGCATGGGC AAGCTGGCCA AGACCGATCG CATCGATGCG
CAGATGCTTC GCGGGTTCGC CCAACTGCTC GACGCCCAGG GCCATGAGCC GCGCGCGCTG
GCCGACGAGC AGCAGCGTGA ACTCACCGCC ATGGTGGCTC GTCGACGCCA ACTGGTGGCC
ATGCTCGTAG CCGAACGCCA ACGCCTTGCG CTGGCTCATC CGAAGGCCAA GGCGAGCATC
CTGGCAGTCA TGGATGCCAT CGCTGCCCAG CTCCATGACA TCGATGGCGA GCTGCGCGAG
CACGTGCGCA TGCATCACGC GGACCTGGCA CGCCTGCTGA CCTCGGTCAA GGGCGTGGGG
CCGACCACGG CCAGCACCCT GCTGGCGCAG TTGCCCGAAC TGGGCAAGCT CAACCGCAAG
CAGATCACTT CCCTGGTGGG CTTGGCTCCC GTCAATCGTG ACTCGGGCAC CTTGCGCGGG
CAACGTCACA TCTTCGGCGG ACGCGCAGAC GTTCGCCGCG TGCTGTACGT CGCCGCCTTG
GTAGGCACGC GATTCAATCC CGTGCTCAAA GCCTTCTATG CAAGCCTGCT GGCCGCAGGC
AAGCCAAAGA AGGTCGCCTT GGTGGCTTGT ATGCACAAGC TGCTTGTCAT CCTCAACGCC
ATCGCCAGAA CCAGGCAGCC CTGGCGTGAC GACTTTGCTG TGGCGACTTG A
 
Protein sequence
MSEPVYVGID IAKASFEVAA SGETQTLSLS NDEAGHAELC QVLVPLVPRL ILLEATGGHE 
QGLALALAAA GLRVSVINPR QARDFARCMG KLAKTDRIDA QMLRGFAQLL DAQGHEPRAL
ADEQQRELTA MVARRRQLVA MLVAERQRLA LAHPKAKASI LAVMDAIAAQ LHDIDGELRE
HVRMHHADLA RLLTSVKGVG PTTASTLLAQ LPELGKLNRK QITSLVGLAP VNRDSGTLRG
QRHIFGGRAD VRRVLYVAAL VGTRFNPVLK AFYASLLAAG KPKKVALVAC MHKLLVILNA
IARTRQPWRD DFAVAT