| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3781 |
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| Symbol | |
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| ID | 7970941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3998428 |
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| End bp | 3999477 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794368 |
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| Product | pentapeptide repeat protein |
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| Protein accession | YP_002945663 |
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| Protein GI | 239816753 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1357] Uncharacterized low-complexity proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCGCG ATGAACTCGT CGACAGGATC CGCCATGGCA CCCAGGTGGG CAACGCCGAT
TGCAGGGGGT GGGACTTGAG CGGCCTCGAC CTCTCCGGCG CGATGATGGA CGACGTCGAT
TTCAGCGGCG CGAACCTCGC CCGGGCCAAT CTCGAAGGCA GCTCGCTGTC GCACTGCAAG
CTTTCAGGCT GCGACTTTTC CTTCGCCCAG TTGAAAGAGG CGCAGTTCTT TCGCAGCCGC
ATGGAGGCGG CGCGGTTCGA TGCCGCCACG CTGGAAGGCG CCTCCTTCGT CGAGTGCCAC
GCGGCGCGGG CGAGCTTCGC GCAGGCCAGG CTCGATCTCA CCAAGTTCTT TCGCTGCGAG
CTCACGCAAA GCCGCTTGCA GTCGCGGCAG TTCGAGCGCG CGAGCTTCAT GGAATCGCAG
CTCGACCGGG CCGATTTCAC CGGCGCGGCG CTGGGCCACG TGACCTTCTA CCGCCTCGAC
CTGAAGACGG CGATTTTCCA GGGTGCATCC GGCCTCAACG CAATGTTCCT GGAGTGCGAC
CTGAGCGGCC AGCGCTTCGC GGGCCTCTCG CTGTGCATGT GCCAGTTCAC GGACAGCCGC
CTGGACGATG CCGACTTCAG CGGCGCCACG CTCACCCAAG CCAACTTCAA GGGCACCACG
CTGAAGCACG CGGACTTCTC GAAAGCGGAC GCATGCCAGG CGCTGTTCCC GGAAGCCGAC
CTCAGCGATG CGAACTGCAG CGGCGGGCGC TTCGACCAGT CGATCTGGGC CGAGGCCCTG
CTGGAACGCG CCGACTTCTC GCAAGCCCGC ATGCCGCTCG GCGTGTTTCA CCACGCGCGC
TGCGCCGGCG CGAACTTCCG CAACGCCGAC ATGCAGGACG CCGATCTTTC ATATGCCGAC
CTGACCGGTG CCGACCTGGG CGGTGCTCAC TTCCTTCGCA CGCGCCTGCA CCGCGCCCAG
CAGCAGGGCG CGCGGTTTTC CAGCCGCAAC GGAATCATCG ACAACGAGCC CGAGCTCTTC
AAGGCACAGG CATGGTCCGA CTCGCACTGA
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| Protein sequence | MTRDELVDRI RHGTQVGNAD CRGWDLSGLD LSGAMMDDVD FSGANLARAN LEGSSLSHCK
LSGCDFSFAQ LKEAQFFRSR MEAARFDAAT LEGASFVECH AARASFAQAR LDLTKFFRCE
LTQSRLQSRQ FERASFMESQ LDRADFTGAA LGHVTFYRLD LKTAIFQGAS GLNAMFLECD
LSGQRFAGLS LCMCQFTDSR LDDADFSGAT LTQANFKGTT LKHADFSKAD ACQALFPEAD
LSDANCSGGR FDQSIWAEAL LERADFSQAR MPLGVFHHAR CAGANFRNAD MQDADLSYAD
LTGADLGGAH FLRTRLHRAQ QQGARFSSRN GIIDNEPELF KAQAWSDSH
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