| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3778 |
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| Symbol | |
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| ID | 7970938 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3992966 |
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| End bp | 3995356 |
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| Gene Length | 2391 bp |
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| Protein Length | 796 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644794365 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_002945660 |
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| Protein GI | 239816750 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.938556 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCCGAG TCGTACGCGC ACACACGCCG CTGGGCGAAG ACCAGCTCAT GTTCCGTTCG
ATGCACGGAA CCGAAGGACT GTCGCAGCTG TTCGAGTTCG AGGTCGAACT GCTGAGTCCC
AGCATGTCGA TCGACATGAA GGCCGTGCTG GGCAAGCCGC TGGCGCTGGA GATACAGACT
GCGGGCGCGC CGCGCTTCCT GAACGGGCAG ATCGTCCGCT TCACGATGAT CGGCAAGGAG
GATGGCGCCT CGCGCTACGT GGTCTACCGC GCCACGGTGC GGCCATGGCT CTGGTATCTC
ACGCGCACCA GCGACTGCAA GATATTCCAG AACAAGTCGG TGGTCGACAT CCTCGAAGAG
GTGTTTGCGG ACTACGGCTT TGCCTTCGAG AAGAAGCTCA GCGCGAGCTA CAGGCAGTGG
GAGTACTGCG TCCAGTACCA GGAAACCGAC TTCGCCTTCG TGAGCCGCCT CATGGAGCAC
GAAGGCATCT ACTACTACTT CACGCATGAG AAGGGCCAGC ACACGCTGGT GCTGGCCGAC
GACATCGGCG CGCACGAGAC CCTGCCCGGC TACGCGAAGA TCGGCTACCT GGCCGCCGAC
CGCGGCGCCG ACCCGCGGCA GGAAGTGATC GACCAGTGGC AGGTCACCGA GGAGATCCGC
CCCGGCAGCT ACGTGGTGGA CGACTTCGAC TTCAAGAAGC CCCGCGCCGA CCTGATGAAC
ATGCGCAGCC AGCCGCGCGG CAACGAGCAC GGCCAGTACG AGATGTACGA ATGGCTCGGC
GGCTTCAGCG AGGCGGAACA GGGCGAGCAC TACTCGCGCA TCCGCCTGGA GGAAGCGCAG
GCGCAGGCCG AGCGCGACAT CGGCCACACC AACGTGCGCG GCATGGCGCC CGGCTACCGC
TTCACCATGC AGAACTGCCC GCGGCAGGAA GACAACCGCG AATACCTCGT GGTGTCGGTG
TCGTATGCGC TGCGCGAGGG CGGCTACGCC AGCGGCGGCG CCGAAGGCCA CTACAGCTTC
GACTTTGCCG TGCAGCCCAG CGCCTATGTC TTTCGCGCGC CGCGCGTCAC GCCGCTGCCG
CGCACCAACG GGCCGCAGAC GGCCACCGTG GTCGGCAAGG CGGGCCAGGA ATTCTGGGTC
GACCAGTACG GCCGCGTAAA GGTGCAGTTC CGCTGGGACC GCTACGGCAA GAGCGACGAG
AACAGCTCCT GCTGGGTGCG TGTCTCCAGC GCATGGGCCG GCTCCAACTA CGGCGCGGTC
AACCATCCGC GCAAGGGACA GGAGGTGGTG GTCGACTTCA TCGGCGGCCA TCCCGACCGG
CCCATCATCA TCGGCCGGGT CTACAACGCC GACCAGATGC CCCCGCTCGA ACTGCCGGCG
CAGGTGACCG TGAGCGGTTT CGTGAGCCGC AGCCAGGACG GCTCGCCGGC CAACGCGAAC
GAATTCATCC TGGACGACGC GCCGGGCTGC GAGCTGGTGC GCATCCATGC CGAGAAGGAC
TTCGAGATCG ATGTCGAGAA CGACCTGCGG ATCCACGTCG AGAACGACGA GACAGAAACC
GTCGACGGCC ACCGCATCAC CCACATCCTG AAGACCGACA CGCTCACCGT CGACCAGACC
CGCGACACCC TCGTCAAGCA GAAGGACACC GCCGAATACC GCAACGGCTC GAAGCTCACC
GTCTCGGGCG CGCTCACCGA GCACTTCTTC GACAACCGCA TCGAGACCAC CACCAAGCTC
GGCTCGAAGG AGACGGTGCT CAGCGGCCTG TCGGAGGTCA CGGTCAACGG CGGCCTGCGC
CACGAGACCT TCGACAAGGG GCTGCTGGTC GACGTGAAGC TCGGCATGGA CGAGGAGATC
CACACCGGCA ACTCCATACT GAAGACGCTC GACGGCAACC GGCAGGAAAG CTACCAGACC
GGTTGGCAGC GAACCATCGT GAGCGGCGGC GGCAAGGACA ACATCAAGGA CGGCCTCACC
GAAACCATCG AGACAGGCGA CCACCACTCG ACCGTCTCGG CCGGCGACTA CAACGGCAAG
GCCCAGAAGG TGACCATCGA AGCCACGGCG GGGGACGTCG AGATCAAGGC CAGCGGCGAC
TTCACCTTCG AGGGCAACCA CGTCAAGCGC GTGAACCGCG TGCTGCTGTG GGACTGGTCG
CCGACGGCGG TGACGGCCAC CGGCCTGTCG AGCGCGACCT ACGGCGTGAA CAACAGCAAC
GCCGGCTTCA CGTTCACGAC CAACATCAAG AAGATGGATG CCACCGCGCA GATCATGAAC
ATGTACGCGC ACCAGGCCAA CTTCGGCGCG GTGAGCTTCT CGAACGTGGT GGCCTCGGAG
CACACCGGCG GCTTCTGGGG CGCGCTCAAG GGCTTCGTGC TCTTCGGCTG A
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| Protein sequence | MPRVVRAHTP LGEDQLMFRS MHGTEGLSQL FEFEVELLSP SMSIDMKAVL GKPLALEIQT
AGAPRFLNGQ IVRFTMIGKE DGASRYVVYR ATVRPWLWYL TRTSDCKIFQ NKSVVDILEE
VFADYGFAFE KKLSASYRQW EYCVQYQETD FAFVSRLMEH EGIYYYFTHE KGQHTLVLAD
DIGAHETLPG YAKIGYLAAD RGADPRQEVI DQWQVTEEIR PGSYVVDDFD FKKPRADLMN
MRSQPRGNEH GQYEMYEWLG GFSEAEQGEH YSRIRLEEAQ AQAERDIGHT NVRGMAPGYR
FTMQNCPRQE DNREYLVVSV SYALREGGYA SGGAEGHYSF DFAVQPSAYV FRAPRVTPLP
RTNGPQTATV VGKAGQEFWV DQYGRVKVQF RWDRYGKSDE NSSCWVRVSS AWAGSNYGAV
NHPRKGQEVV VDFIGGHPDR PIIIGRVYNA DQMPPLELPA QVTVSGFVSR SQDGSPANAN
EFILDDAPGC ELVRIHAEKD FEIDVENDLR IHVENDETET VDGHRITHIL KTDTLTVDQT
RDTLVKQKDT AEYRNGSKLT VSGALTEHFF DNRIETTTKL GSKETVLSGL SEVTVNGGLR
HETFDKGLLV DVKLGMDEEI HTGNSILKTL DGNRQESYQT GWQRTIVSGG GKDNIKDGLT
ETIETGDHHS TVSAGDYNGK AQKVTIEATA GDVEIKASGD FTFEGNHVKR VNRVLLWDWS
PTAVTATGLS SATYGVNNSN AGFTFTTNIK KMDATAQIMN MYAHQANFGA VSFSNVVASE
HTGGFWGALK GFVLFG
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