Gene Vapar_3754 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3754 
Symbol 
ID7970911 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3971157 
End bp3971741 
Gene Length585 bp 
Protein Length194 aa 
Translation table11 
GC content68% 
IMG OID644794338 
Productputative lipoprotein 
Protein accessionYP_002945636 
Protein GI239816726 
COG category[S] Function unknown 
COG ID[COG2930] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.199216 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGATCCA TCCAGTTCAG AAACCTTGCG CTCGCGTGTG CCGTTGCAGT GGGCGGCGCC 
GCGGTGGTGG GCTGCACCAC CACGCGGCCC CAGGACCATG CCAGCACCGC TTCGTCGCGT 
GCATCGATCG ATGCCCAGGT CGACGCCGCA CTGTCCAAGT TGTACGACTC GGTCAAGGGC 
TCGCGCGAGG TCGTCTCCTC GTCCAGCGGC GTGCTGGTGT TTCCTGCCGT GGTCGGCGCC 
AGCATGGGCA TCGGTGCCGA ATACGGCCGG GGCGCGCTGC GCGTGAACGG GCGCACCCAG 
GCCTACTACA GCACCACCGC GGGCTCGATC GGCTTCCAGG CCGGCGCGCA GTCGAAGGCC 
GTGATCTATG TGTTCACCAC GCAGGCCGCG CTCGACAAGT TCCGCAACAG CAAGGGATGG 
ACGGCGGGCG CCGATGCCAC CGTGGCCGCC GCAACCATCG GCGCGAACGG CAGCATCGAC 
ACCAACACGC TGCGCCAGCC TGTGGTCGGC TTCGTGCTGA CCAACGTGGG GCTCGAGGCG 
GGCGTTTCGC TGTCGGGCGC GAAGATCACG GAGATCCGGC TGTAG
 
Protein sequence
MRSIQFRNLA LACAVAVGGA AVVGCTTTRP QDHASTASSR ASIDAQVDAA LSKLYDSVKG 
SREVVSSSSG VLVFPAVVGA SMGIGAEYGR GALRVNGRTQ AYYSTTAGSI GFQAGAQSKA 
VIYVFTTQAA LDKFRNSKGW TAGADATVAA ATIGANGSID TNTLRQPVVG FVLTNVGLEA 
GVSLSGAKIT EIRL