| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3741 |
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| Symbol | |
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| ID | 7970898 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3939045 |
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| End bp | 3941216 |
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| Gene Length | 2172 bp |
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| Protein Length | 723 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794325 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_002945623 |
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| Protein GI | 239816713 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.433802 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTCCCC TGCCCCGACC CCGCCTGCTG AGCGCCGCGC TTGCCTCGGC CTTCGGAACC
GCCTGCACCC TGTGGGCGGC CCCCGCCTTC TCGCAGGACA GCAGCAACCT GCCGGCGGTG
ACCGTCACGG CCGATACGGA AGCGTCGGCC AAGGGCCATG TGAACGGCTA TGTGGCCAAG
CGCAGCGCCA CCGGCACCAA GACCGACACC CCGATCCTGG AAACCCCCCA GTCGATCTCG
GTGGTCACGG CCGACCGCGT GGCCGCCATC GGCGCCACCA CCGTGAAGGA CGCGCTGGGC
TACACCCCCG GCGTCACCAC CACCGTCTTC GGCGCCGACT CGCGCTACGA CTGGATCTCG
ATCCGCGGCT TCGACGGCTA CGCGCCGGGC TTCTACCTGG ACGGCATGCC CCTGCGCAAC
AACGGCAACT GGGGCGTCTG GCAGATCGAG CCCTACGGCA TGGAGCGCAT CGAAGTGCTG
CGCGGACCGG CCTCGGTGCT CTACGGCCAG GCCAGCCCCG GCGGCGTGGT CAACGTCGTG
AGCAAGCGCC CCACCACCGA GCCGCTGCGC GAAGTGCAGC TGCAACTGGG CAGCAACAAC
CGCACCCAGA TCGCCGCCGA CTTCTCCGGC CCCATCGATG CCGAGGGCAA GCTCAGCTAC
CGCCTGACGG CCGTGGGCCG CGACAGCAAG CTGCCGGCCG CCAGCATGGA CGACGACCGC
TTCTACATCG CGCCCTCGCT CACCTGGCGC CCCTCGGCGG ACACCAGGCT CACGCTGCTG
TCGCACTTCA ACCGCGTGCG CGGCGGTGTG TACACGCGCG GGCGCCCGAC GGTGGGCTCG
CTGGTTCCCA CGCGTTTCGG CAACTACATT CCCGACTCGC TCTTCGTGGG CGATCCCAAC
TTCAACCACT TCGACGTGGA CCAGTGGATG GTCGGCTACG AGTTCGAGCA CCGCTTCAAC
GACACCTTCA CCGCGCGCCA GAACCTGCGC TACGGCCGGC TGGACGTCGA CTACGGCGCC
GTGCAGGGCC GCGCGATCGT GCCGATCAAC AGCAACGTCT CCGACCCGCG CAACTACCAG
ATGCTGCGCC GGAGCATCTC GGGCAGCCGC GAGAGCGTCT CGACCTTCAC GCTGGACAAC
CAGCTCGAAG CCAACTTCGT CTCGGGCGAC TGGAAGCACA AGGTGCTGAT CGGCCTGGAC
CACCAGCGCA CCGGCATCGA GCAGGCCAGC TACAGCGGCG GCAGTGCGCC GAGCATCAAC
ATCTACGCAC CCGTGTACGG CGGCCCGTTC TTCGTGCCCG CGCCCTATGT GGACGCCAAC
ACCCGCCTGA CGCAGACCGG CCTGTACATC CAGGACCAGA TCAAGTGGGG CGAGCGTTGG
AGCCTCACGC TCGGCGGCCG CTACGACCGC GCCTCCACGG TCATCCATAG CAACCTGGAC
GGCACGCGCA GCGACATCCC CGAGCACAAG TTCACCAAGC GCGGCGGCCT GGTCTACACC
TTCCCGAGCG GCTGGGCACC CTACCTGAGC TACTCCGAAT CGTTCTCGCC CTCGGCGCGC
CTGAACCCGG ACACCCAGAG CCCGTTCAAG CCCGAGACCG GCCGCCAGTA CGAAGCCGGC
GTGCGTTACC AACCCGTGGG CACCACCGAC AGCTACAGCG CCGCCCTCTT CGACCTGCGC
CGCCAGAACT ACATCACGGC CGACGCCAAC TTCCGCCCGC GCCAGACCGG CGAGGTGCTG
GTGCGCGGCC TGGAGCTCGA GGCGGCCTTC CAGCCCGTCA AGCGCATGAA CGTGACGGTG
TCCTACGCCT ACACGCCCAA GGTCGAGATC ACGGCCAGCA GCACGCCGAG CGAAATCGGC
ACGCCGCTGC TCGCGGTGTC CAGGCACCGC GCCGCGCTCT GGGCGGACTA CCGCTTCGAC
AACGGCATCA AGGTCGGCCT GGGCGCGCGC TTCACCGGCT CGAACCGCGG CGACCTGAAC
AAGGCGCCGG TCCAGGTGCC TTCGTACACC GTGTTCGACG CAATGATCGG CTATGACATC
GACCGCTGGA GCCTTGCGCT GAACGTGCGC AACCTGGCCG ACAAGACCTA CTTCGCGAAC
TGCGACCAGT ACGGCAACTG CTACTACGGC GACCAGCGCA AGGTCACGGC CACGGCCACC
TACCGCTGGT AG
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| Protein sequence | MRPLPRPRLL SAALASAFGT ACTLWAAPAF SQDSSNLPAV TVTADTEASA KGHVNGYVAK
RSATGTKTDT PILETPQSIS VVTADRVAAI GATTVKDALG YTPGVTTTVF GADSRYDWIS
IRGFDGYAPG FYLDGMPLRN NGNWGVWQIE PYGMERIEVL RGPASVLYGQ ASPGGVVNVV
SKRPTTEPLR EVQLQLGSNN RTQIAADFSG PIDAEGKLSY RLTAVGRDSK LPAASMDDDR
FYIAPSLTWR PSADTRLTLL SHFNRVRGGV YTRGRPTVGS LVPTRFGNYI PDSLFVGDPN
FNHFDVDQWM VGYEFEHRFN DTFTARQNLR YGRLDVDYGA VQGRAIVPIN SNVSDPRNYQ
MLRRSISGSR ESVSTFTLDN QLEANFVSGD WKHKVLIGLD HQRTGIEQAS YSGGSAPSIN
IYAPVYGGPF FVPAPYVDAN TRLTQTGLYI QDQIKWGERW SLTLGGRYDR ASTVIHSNLD
GTRSDIPEHK FTKRGGLVYT FPSGWAPYLS YSESFSPSAR LNPDTQSPFK PETGRQYEAG
VRYQPVGTTD SYSAALFDLR RQNYITADAN FRPRQTGEVL VRGLELEAAF QPVKRMNVTV
SYAYTPKVEI TASSTPSEIG TPLLAVSRHR AALWADYRFD NGIKVGLGAR FTGSNRGDLN
KAPVQVPSYT VFDAMIGYDI DRWSLALNVR NLADKTYFAN CDQYGNCYYG DQRKVTATAT
YRW
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