Gene Vapar_3692 details

Gene Information

• Locus tag: Vapar_3692
• ID: 7973925
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 3892978
• End bp: 3893661
• Gene Length: 684 bp
• Protein Length: 227 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644794276
• Product: hypothetical protein
• Protein accession: YP_002945574
• Protein GI: 239816664
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0235] Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGCGCTCGC GCTGCGCGCG GCTGCCCCAC CACGGCTTGT CCGAAGGGGT CTGCAACCAT 
TTCAGCGTAC TGCTGCCGGG CGCGCAGGAC CGCTACCTGA TCAATCCGCG CGGCCTGCAC 
TGGAGCGAGA TCGGTGCCGA CGACATCGTG CTGATCGACG TGCACGGCGA AGTGCTCGCG 
GGGCGCCACC GCGTGGAGCC GACGGCCCTC TTCATCCATG GCGCAGTGCA CCGCATCACG 
GGCCACGCGG TCGTGCTGCA TTGCCATATG CCCTACGCCA CCGCGCTCAC GCTCACGGCC 
GAGCGCGCGC TCGATCCCAC GCTGAGCCAG AACGCGATGC GCTACATGAA CCGCATCGCC 
ATCGATGCGG TCTACAACGG CCTCGCGCTC GACGATGCCG AGGGCGAGCG CATCGCGCGC 
GCCATGGCGG GCAAGGACAT TGCCTTTCTT GCGAACCACG GCGTGATCGT GGCGGGCGCC 
TGCATTGCGC ATGCCTACGA CGACCTCTAC TACCTGGAAC GCGCGAGCCT GCACCAGGTG 
ATTGCGCAAT CGACCGGGCG CCCGCTGGTT CCGGTGGACG CCAAGATGGC CGCGCATGTG 
GCGGCGCAGA TCCAGGGCGA ACGCGAGCAG TCGGACCTGT TCTTCGAGGC GCTGCGGCGG 
CTGCTGCCTC CGCCGCGCGG CTGA 

 

Protein sequence

MRSRCARLPH HGLSEGVCNH FSVLLPGAQD RYLINPRGLH WSEIGADDIV LIDVHGEVLA 
GRHRVEPTAL FIHGAVHRIT GHAVVLHCHM PYATALTLTA ERALDPTLSQ NAMRYMNRIA 
IDAVYNGLAL DDAEGERIAR AMAGKDIAFL ANHGVIVAGA CIAHAYDDLY YLERASLHQV 
IAQSTGRPLV PVDAKMAAHV AAQIQGEREQ SDLFFEALRR LLPPPRG